Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008709.1-P | Field mustard | nucleus | 79.01 | 83.75 |
| CDX69536 | Canola | nucleus | 81.02 | 83.46 |
| CDY60930 | Canola | nucleus | 80.84 | 83.27 |
| CDX70604 | Canola | nucleus | 86.68 | 81.9 |
| CDX78623 | Canola | nucleus | 86.5 | 79.0 |
| Bra006294.1-P | Field mustard | nucleus | 86.31 | 78.83 |
| VIT_14s0108g01040.t01 | Wine grape | nucleus | 64.42 | 64.42 |
| KRG93559 | Soybean | nucleus | 63.32 | 63.32 |
| KRH40065 | Soybean | nucleus | 62.04 | 62.96 |
| KRH01196 | Soybean | nucleus | 62.04 | 62.62 |
| KRH18467 | Soybean | nucleus | 62.59 | 62.59 |
| KRH58152 | Soybean | cytosol | 14.42 | 62.2 |
| PGSC0003DMT400003371 | Potato | nucleus | 59.67 | 60.44 |
| PGSC0003DMT400064701 | Potato | nucleus | 60.77 | 60.0 |
| VIT_09s0002g00070.t01 | Wine grape | mitochondrion | 13.69 | 58.59 |
| Solyc02g067210.2.1 | Tomato | nucleus | 60.4 | 53.73 |
| VIT_09s0002g00030.t01 | Wine grape | cytosol, nucleus, plastid | 22.99 | 53.39 |
| Solyc02g088120.2.1 | Tomato | nucleus | 50.91 | 53.14 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 43.8 | 50.1 |
| VIT_14s0006g00030.t01 | Wine grape | cytosol | 25.0 | 48.41 |
| AT2G03110.1 | Thale cress | cytosol | 13.32 | 47.71 |
| AT4G18375.2 | Thale cress | nucleus | 26.82 | 24.26 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 27.19 | 23.99 |
| AT5G46190.2 | Thale cress | cytosol | 29.2 | 23.22 |
| AT5G53060.1 | Thale cress | nucleus | 25.73 | 21.63 |
| AT2G22600.1 | Thale cress | mitochondrion | 23.36 | 20.25 |
| AT5G09560.1 | Thale cress | cytosol | 21.9 | 20.0 |
| AT4G26000.1 | Thale cress | cytosol | 16.42 | 18.18 |
| AT5G64390.3 | Thale cress | nucleus | 28.28 | 17.9 |
| AT3G04610.2 | Thale cress | cytosol | 18.07 | 17.16 |
Protein Annotations
| Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:831379 | UniProt:A0A178UKB4 | ProteinID:AED92141.1 | ProteinID:AED92142.1 |
| EMBL:AK228673 | EMBL:AK229313 | ArrayExpress:AT5G15270 | EnsemblPlantsGene:AT5G15270 | RefSeq:AT5G15270 | TAIR:AT5G15270 |
| RefSeq:AT5G15270-TAIR-G | EnsemblPlants:AT5G15270.2 | TAIR:AT5G15270.2 | Unigene:At.31826 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR036612 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | RefSeq:NP_197031.3 | RefSeq:NP_851040.1 | ProteinID:OAO93717.1 | PFAM:PF00013 |
| PO:PO:0000293 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF151 | UniProt:Q0WNX3 | SMART:SM00322 |
| SUPFAM:SSF54791 | UniParc:UPI0000196D45 | SEG:seg | : | : | : |
Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
Coordinates
chr5:+:4958303..4962102
Molecular Weight (calculated)
59715.5 Da
IEP (calculated)
8.242
GRAVY (calculated)
-0.510
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.