Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99470 | Canola | nucleus | 32.01 | 71.59 |
| CDX78846 | Canola | nucleus | 63.86 | 67.42 |
| Bra013302.1-P | Field mustard | nucleus | 64.69 | 66.89 |
| CDX99471 | Canola | nucleus | 22.11 | 62.33 |
| AT5G46190.2 | Thale cress | cytosol | 66.5 | 58.49 |
| KRH42565 | Soybean | nucleus | 55.61 | 53.92 |
| VIT_10s0003g03860.t01 | Wine grape | cytosol, nucleus, plastid | 54.95 | 53.45 |
| KRH58669 | Soybean | endoplasmic reticulum, nucleus | 54.13 | 52.82 |
| PGSC0003DMT400076798 | Potato | nucleus | 51.82 | 50.65 |
| Solyc08g048500.2.1 | Tomato | nucleus | 51.49 | 50.57 |
| GSMUA_Achr6P03670_001 | Banana | cytosol, nucleus, plastid | 48.68 | 45.31 |
| TraesCS3A01G512500.1 | Wheat | nucleus | 45.54 | 43.74 |
| TraesCS3B01G580700.1 | Wheat | nucleus | 45.21 | 43.42 |
| TraesCS3D01G519700.1 | Wheat | nucleus | 45.21 | 43.42 |
| HORVU5Hr1G121900.1 | Barley | nucleus | 45.05 | 43.2 |
| HORVU0Hr1G007380.3 | Barley | mitochondrion, nucleus | 44.88 | 43.04 |
| OQU80050 | Sorghum | nucleus | 44.39 | 42.77 |
| TraesCS4A01G333900.1 | Wheat | nucleus | 44.55 | 42.72 |
| TraesCS5D01G538200.3 | Wheat | nucleus | 44.39 | 42.7 |
| TraesCS5B01G551800.1 | Wheat | nucleus | 44.39 | 42.63 |
| GSMUA_Achr9P18150_001 | Banana | endoplasmic reticulum, golgi | 48.51 | 42.55 |
| Zm00001d024270_P001 | Maize | nucleus | 44.22 | 42.41 |
| Zm00001d049390_P001 | Maize | nucleus | 43.23 | 41.52 |
| AT2G03110.1 | Thale cress | cytosol | 8.25 | 32.68 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 22.44 | 28.39 |
| AT5G15270.2 | Thale cress | nucleus | 24.26 | 26.82 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 23.27 | 22.71 |
| AT5G53060.1 | Thale cress | nucleus | 23.93 | 22.24 |
| AT5G09560.1 | Thale cress | cytosol | 19.97 | 20.17 |
| AT2G22600.1 | Thale cress | mitochondrion | 20.46 | 19.62 |
| AT5G64390.3 | Thale cress | nucleus | 26.07 | 18.24 |
| AT4G26000.1 | Thale cress | cytosol | 13.86 | 16.97 |
| AT3G04610.2 | Thale cress | cytosol | 15.51 | 16.29 |
Protein Annotations
| Gene3D:3.30.1370.10 | MapMan:35.1 | EntrezGene:827566 | UniProt:A0A178UU63 | ProteinID:AEE84036.1 | ProteinID:ANM67059.1 |
| ArrayExpress:AT4G18375 | EnsemblPlantsGene:AT4G18375 | RefSeq:AT4G18375 | TAIR:AT4G18375 | RefSeq:AT4G18375-TAIR-G | EnsemblPlants:AT4G18375.2 |
| TAIR:AT4G18375.2 | EMBL:AY133701 | Unigene:At.32914 | EMBL:BT001108 | ProteinID:CAA16717.1 | ProteinID:CAB78839.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | RefSeq:NP_001328912.1 | RefSeq:NP_193572.1 | ProteinID:OAO97153.1 | UniProt:P58223 | PFAM:PF00013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020094 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF137 |
| MEROPS:S01.441 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI00000017E0 | SEG:seg | : |
Description
KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
Coordinates
chr4:+:10152402..10155418
Molecular Weight (calculated)
65764.6 Da
IEP (calculated)
7.883
GRAVY (calculated)
-0.234
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.