Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52947 | Canola | plastid | 79.55 | 85.76 |
| CDY46555 | Canola | plastid | 79.87 | 85.37 |
| Bra014290.1-P | Field mustard | plastid | 79.55 | 85.03 |
| Solyc12g055780.1.1 | Tomato | cytosol, nucleus | 31.24 | 52.43 |
| KRH44614 | Soybean | mitochondrion, nucleus | 43.0 | 47.26 |
| PGSC0003DMT400074198 | Potato | plastid | 33.66 | 47.07 |
| KRH47290 | Soybean | mitochondrion, nucleus | 42.35 | 47.05 |
| VIT_09s0054g00450.t01 | Wine grape | plastid | 50.72 | 44.74 |
| GSMUA_Achr10P... | Banana | nucleus | 41.22 | 37.98 |
| Os09t0498600-01 | Rice | plastid | 36.55 | 36.85 |
| TraesCS5A01G276800.5 | Wheat | plastid | 35.91 | 35.57 |
| TraesCS5B01G276400.1 | Wheat | plastid | 35.43 | 35.2 |
| TraesCS5D01G284200.4 | Wheat | plastid | 35.43 | 35.09 |
| KXG35952 | Sorghum | plastid | 34.94 | 34.89 |
| Zm00001d006055_P002 | Maize | plastid | 33.98 | 33.81 |
| HORVU5Hr1G075110.3 | Barley | mitochondrion | 34.94 | 33.7 |
| Solyc12g055790.1.1 | Tomato | nucleus | 13.37 | 33.33 |
| AT2G03110.1 | Thale cress | cytosol | 7.09 | 28.76 |
| AT5G15270.2 | Thale cress | nucleus | 23.99 | 27.19 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 20.13 | 26.1 |
| AT2G22600.1 | Thale cress | mitochondrion | 26.25 | 25.79 |
| AT4G18375.2 | Thale cress | nucleus | 22.71 | 23.27 |
| AT5G53060.1 | Thale cress | nucleus | 23.35 | 22.24 |
| AT5G64390.3 | Thale cress | nucleus | 30.76 | 22.06 |
| AT5G09560.1 | Thale cress | cytosol | 21.26 | 22.0 |
| AT5G46190.2 | Thale cress | cytosol | 23.19 | 20.9 |
| AT4G26000.1 | Thale cress | cytosol | 13.85 | 17.37 |
| AT3G04610.2 | Thale cress | cytosol | 14.17 | 15.25 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:841583 | UniProt:A0A178WDD2 | ProteinID:AAG50879.1 |
| ProteinID:AAG52626.1 | ProteinID:AEE32685.1 | EMBL:AK227874 | ArrayExpress:AT1G51580 | EnsemblPlantsGene:AT1G51580 | RefSeq:AT1G51580 |
| TAIR:AT1G51580 | RefSeq:AT1G51580-TAIR-G | EnsemblPlants:AT1G51580.1 | TAIR:AT1G51580.1 | EMBL:BT008776 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | RefSeq:NP_175569.1 | ProteinID:OAP16430.1 | PFAM:PF00013 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50084 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF174 | UniProt:Q9C553 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI00000A0300 |
| SEG:seg | : | : | : | : | : |
Description
At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
Coordinates
chr1:+:19125583..19128161
Molecular Weight (calculated)
67118.8 Da
IEP (calculated)
6.064
GRAVY (calculated)
-0.363
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.