CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH03167
KRH03466
KRH05167
KRH15886
KRH45889
KRH52439
KRH54542
KRH54739
KRH56776
KRH56919
KRH61771
KRH63174
KRH63357
KRH70968
KRH75117

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	KRH03167	AT1G69170.1	21798944
AT1G51580.1	KRH54739	AT1G69170.1	21798944
AT1G51580.1	KRH56776	AT1G69170.1	21798944
AT1G51580.1	KRH63174	AT1G69170.1	21798944
AT1G51580.1	KRH70968	AT1G69170.1	21798944
AT1G51580.1	KRH75117	AT1G69170.1	21798944
AT1G51580.1	KRG99108	AT1G69690.1	21798944
AT1G51580.1	KRH45889	AT1G69690.1	21798944
AT1G51580.1	KRH05167	AT2G25490.1	21798944
AT1G51580.1	KRH15886	AT2G25490.1	21798944
AT1G51580.1	KRH52439	AT2G25490.1	21798944
AT1G51580.1	KRH61771	AT2G25490.1	21798944
AT1G51580.1	KRH03466	AT3G47620.1	21798944
AT1G51580.1	KRH54542	AT3G47620.1	21798944
AT1G51580.1	KRH56919	AT3G47620.1	21798944
AT1G51580.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44614	Soybean	mitochondrion, nucleus	92.84	91.86
VIT_09s0054g00450.t01	Wine grape	plastid	63.33	50.28
Solyc12g055780.1.1	Tomato	cytosol, nucleus	32.74	49.46
PGSC0003DMT400074198	Potato	plastid	37.75	47.52
AT1G51580.1	Thale cress	cytosol, plastid	47.05	42.35
CDY52947	Canola	plastid	42.22	40.97
Bra014290.1-P	Field mustard	plastid	42.04	40.45
CDY46555	Canola	plastid	42.04	40.45
GSMUA_Achr10P...	Banana	nucleus	47.76	39.61
Os09t0498600-01	Rice	plastid	42.58	38.64
KXG35952	Sorghum	plastid	41.32	37.14
TraesCS5A01G276800.5	Wheat	plastid	41.5	37.0
TraesCS5B01G276400.1	Wheat	plastid	41.32	36.96
TraesCS5D01G284200.4	Wheat	plastid	41.32	36.84
Zm00001d006055_P002	Maize	plastid	40.43	36.22
HORVU5Hr1G075110.3	Barley	mitochondrion	41.32	35.87
KRH49838	Soybean	plastid	34.53	32.71
KRH42077	Soybean	plastid	34.17	32.54
KRH39475	Soybean	plastid	34.17	31.26
KRH62129	Soybean	plastid	36.31	29.94
Solyc12g055790.1.1	Tomato	nucleus	13.06	29.32
KRH52837	Soybean	plastid	35.42	29.29
KRH21739	Soybean	plastid	36.85	28.81
KRH10613	Soybean	plastid	36.49	28.06
KRH74462	Soybean	nucleus	30.59	27.76
KRG93559	Soybean	nucleus	26.3	26.82
KRH18467	Soybean	nucleus	25.76	26.28
KRH58152	Soybean	cytosol	5.9	25.98
KRH01196	Soybean	nucleus	25.22	25.97
KRH40065	Soybean	nucleus	25.04	25.93
KRH64403	Soybean	nucleus	26.12	22.67
KRH53532	Soybean	nucleus	25.94	22.41
KRH42565	Soybean	nucleus	24.69	22.08
KRH58669	Soybean	endoplasmic reticulum, nucleus	24.51	22.06
KRH00973	Soybean	nucleus, plastid	12.34	19.06
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	12.52	18.04
KRH02776	Soybean	nucleus	13.24	16.97
KRH19104	Soybean	nucleus	13.06	16.74
KRH12329	Soybean	cytosol, nucleus	12.34	15.61
KRH37335	Soybean	cytosol, nucleus	12.34	15.58
KRG97000	Soybean	nucleus	11.81	14.8
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	11.63	14.67
KRG95633	Soybean	nucleus	11.99	12.48
KRH67322	Soybean	nucleus	11.63	12.29
KRH71306	Soybean	nucleus	10.73	12.12
KRH32136	Soybean	cytosol	11.63	11.5

Protein Annotations

EntrezGene:100806721	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02004144	EnsemblPlantsGene:GLYMA_07G020300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1KGP5	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH47290	ProteinID:KRH47290	ProteinID:KRH47290.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002337F07	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:1588478..1592054

Molecular Weight (calculated)

60343.0 Da

IEP (calculated)

7.395

GRAVY (calculated)

-0.289

Length

559 amino acids

Sequence
(BLAST)

001: MFNNNSKKRR HAPPAAPDAV FRIVCPAAKT EDVATIGGDG AKILVEDLVS AEERVVVIVG EESAAQVALV RVFERTVDEE TKNSTVSCKL VAPSYQVGCV
101: LGRGGKIVEK IRQDTGAHIR VLPKDQPPLP PPPGEEFIQI TGNFGAVKKA VLSVSACFYD NNSGAFKPLD HHSRGCYSES AGHSSHRMFL EEDVVFKLLC
201: HHEKVGSLIG KGGSVVRALQ NETGASIQIV EAGPDSDERV VVISARETSE QKHSPAQEAV IRVHCRLTEI GFEPSAAVVA KLLVRSPQVG CLLGKGGLVI
301: SEMRRVTGAS IRIFSKEQIK YISQNEEVVQ VIGSLQSVQD ALFHITSRIR ETIFPIRTPP NFSAPPHLPP FPEMPPPLFR PRNHLMSSGH PPPPQVGHPH
401: DHSTVPPMPV DHQQHAFVHG MGRGPPNMDR VPYPRGYEGP NSPRSWNPLA VNRGNSGGTA DTSSLASRNE NLGENGNPLQ NPNNLTIEIT IPHMYLTHVY
501: GENNSNLTQI RQTSGANVVV HDPKPGATEG LVIVSGAPDQ THAAQSLIQA FILCGQTIA

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.