Factsheet for Bra014290.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004363.1-P
Bra004407.1-P
Bra007875.1-P
Bra018126.1-P
Bra034254.1-P
Bra038324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	Bra004363.1-P	AT1G69170.1	21798944
AT1G51580.1	Bra038324.1-P	AT1G69170.1	21798944
AT1G51580.1	Bra003986.1-P	AT1G69690.1	21798944
AT1G51580.1	Bra004407.1-P	AT1G69690.1	21798944
AT1G51580.1	Bra007875.1-P	AT1G69690.1	21798944
AT1G51580.1	Bra034254.1-P	AT2G25490.1	21798944
AT1G51580.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46555	Canola	plastid	99.66	99.66
AT1G51580.1	Thale cress	cytosol, plastid	85.03	79.55
Solyc12g055780.1.1	Tomato	cytosol, nucleus	29.26	45.95
KRH44614	Soybean	mitochondrion, nucleus	40.96	42.12
PGSC0003DMT400074198	Potato	plastid	32.19	42.12
KRH47290	Soybean	mitochondrion, nucleus	40.45	42.04
VIT_09s0054g00450.t01	Wine grape	plastid	48.71	40.2
GSMUA_Achr10P...	Banana	nucleus	38.38	33.09
Os09t0498600-01	Rice	plastid	34.94	32.95
KXG35952	Sorghum	plastid	33.39	31.19
TraesCS5A01G276800.5	Wheat	plastid	33.39	30.94
TraesCS5D01G284200.4	Wheat	plastid	33.39	30.94
Solyc12g055790.1.1	Tomato	nucleus	13.25	30.92
TraesCS5B01G276400.1	Wheat	plastid	33.22	30.88
Zm00001d006055_P002	Maize	plastid	32.19	29.97
HORVU5Hr1G075110.3	Barley	mitochondrion	32.7	29.5
Bra008709.1-P	Field mustard	nucleus	22.89	25.73
Bra038508.1-P	Field mustard	cytosol, plastid	27.71	25.2
Bra030226.1-P	Field mustard	plastid	25.47	23.87
Bra026852.1-P	Field mustard	nucleus	19.62	23.51
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.52	23.47
Bra013302.1-P	Field mustard	nucleus	21.34	21.16
Bra006294.1-P	Field mustard	nucleus	21.51	20.83
Bra024789.1-P	Field mustard	cytosol	13.08	20.21
Bra022624.1-P	Field mustard	nucleus	22.89	20.12
Bra024292.1-P	Field mustard	nucleus	29.6	20.07
Bra003085.1-P	Field mustard	nucleus	22.03	20.03
Bra025032.1-P	Field mustard	nucleus	21.69	19.5
Bra001111.1-P	Field mustard	cytosol	12.91	19.23
Bra013940.1-P	Field mustard	cytosol	11.7	16.0
Bra019133.1-P	Field mustard	cytosol	10.33	15.08

Protein Annotations

EnsemblPlants:Bra014290.1	EnsemblPlants:Bra014290.1-P	EnsemblPlantsGene:Bra014290	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002545DD1	UniProt:M4DCS3	MapMan:35.1	:

Description

AT1G51580 (E=4e-161) | KH domain-containing protein

Coordinates

chrA08:-:1885584..1887883

Molecular Weight (calculated)

62656.2 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.352

Length

581 amino acids

Sequence
(BLAST)

001: MDFSSSKRPA TASAESVQFR LLCPASRTGA IIGKGGSVIR HLQSLTGSKI RVIDDIPVPS EERVVLITTP NATKKDDSSN ACDPENPSSD QTKPPETAAA
101: DKPGEEAPPP PSSSALVRVL ERIVFGDDAA NGDGSELDKG EFEGLCRVLV RGNQVDYLMS QGGMMMQRIR DESGASVRIA STDQIPPCAF PGDVVIQING
201: KFSNVKKALL MITSSLQESG APPTWEECSF PPPGYPPDYH SMEYHQWDHP PNPMAEDVGP FNRPPIVEEE VAFRLLCPAD KVGSLIGKGG AVVRALQNET
301: GASIKVSDPT HETEERIVVI SARENLERRH SLAQDAVMCV HNRIVEIGFE PSAAVVARLL VHSPFIGHQA TKYESQHDEI VQIIGNVKTV QDALFQITSR
401: LREAMFPGRI PFPGMGGPPP PFMGPYPEPP PPFGPRPYPA SPDRYHSPVG PYHERHCHGP GFDRPPSPMS WTPQPPIDGH PGGMVPDVNH GFALRNEPIG
501: GENLPMTSAN VEIVVPQAYL GHVYGENCSN LNYIKQVTGA NVVVHDPKAG TTEGLVVVSG TSDQAHFAQS LLHAFILCGQ S

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.