Factsheet for Zm00001d006055_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000408_P001
Zm00001d015778_P001
Zm00001d018045_P001
Zm00001d036880_P003
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001
Zm00001d053642_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	Zm00001d000408_P001	AT2G25490.1	21798944
AT1G51580.1	Zm00001d015778_P001	AT2G25490.1	21798944
AT1G51580.1	Zm00001d036880_P003	AT2G25490.1	21798944
AT1G51580.1	Zm00001d053642_P001	AT2G25490.1	21798944
AT1G51580.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G51580.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G51580.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G51580.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35952	Sorghum	plastid	92.79	93.09
TraesCS5B01G276400.1	Wheat	plastid	76.92	76.8
Os09t0498600-01	Rice	plastid	75.48	76.46
TraesCS5D01G284200.4	Wheat	plastid	76.6	76.24
TraesCS5A01G276800.5	Wheat	plastid	75.96	75.6
HORVU5Hr1G075110.3	Barley	mitochondrion	77.4	75.0
KRH47290	Soybean	mitochondrion, nucleus	36.22	40.43
GSMUA_Achr10P...	Banana	nucleus	43.43	40.21
KRH44614	Soybean	mitochondrion, nucleus	36.06	39.82
PGSC0003DMT400074198	Potato	plastid	27.72	38.96
Solyc12g055780.1.1	Tomato	cytosol, nucleus	22.76	38.38
VIT_09s0054g00450.t01	Wine grape	plastid	43.11	38.21
AT1G51580.1	Thale cress	cytosol, plastid	33.81	33.98
CDY52947	Canola	plastid	29.97	32.47
Bra014290.1-P	Field mustard	plastid	29.97	32.19
CDY46555	Canola	plastid	29.97	32.19
Zm00001d029328_P002	Maize	nucleus	21.47	24.77
PGSC0003DMT400087680	Potato	plastid	9.13	22.89
Solyc12g055790.1.1	Tomato	nucleus	9.13	22.89
Zm00001d009014_P004	Maize	nucleus	24.68	21.84
Zm00001d024270_P001	Maize	nucleus	21.79	21.52
Zm00001d049390_P001	Maize	nucleus	20.99	20.76
Zm00001d013963_P002	Maize	nucleus	25.96	19.85
Zm00001d019538_P002	Maize	plastid	20.99	19.41
Zm00001d046033_P001	Maize	nucleus	20.19	18.89
Zm00001d037055_P003	Maize	nucleus	19.55	16.49
Zm00001d032597_P006	Maize	golgi, plasma membrane	25.8	16.33
Zm00001d029973_P001	Maize	plasma membrane	10.26	14.29
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	10.1	14.29
Zm00001d030968_P006	Maize	extracellular	11.54	14.17
Zm00001d015093_P001	Maize	cytosol	8.65	11.54
Zm00001d003290_P002	Maize	mitochondrion	4.01	10.92
Zm00001d014180_P004	Maize	cytosol	10.74	10.36
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	10.58	10.05
Zm00001d010815_P001	Maize	mitochondrion	4.17	7.43

Protein Annotations

EntrezGene:100279560	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:B7ZYR3	EMBL:BT054455
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	ProteinID:ONM22683.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF174	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI00019173D0	EnsemblPlantsGene:Zm00001d006055	EnsemblPlants:Zm00001d006055_P002
EnsemblPlants:Zm00001d006055_T002	SEG:seg	:	:	:	:

Description

RNA-binding KH domain-containing protein

Coordinates

chr2:+:196661880..196666379

Molecular Weight (calculated)

67255.2 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.385

Length

624 amino acids

Sequence
(BLAST)

001: MEVVSTPAGA GAAASSSSSS SSSTPSPSTR RPTTTLRLLC PSSRVATLRP SRDLHVDHPP VGDEAVLVIS GPDTPAAAVR AWEHVVGHRV EGDEAMGGEE
101: EEREVTGAVG CRMLAAGWQV GCVLGKGGKT VERMRQECGA QIRVFRNREQ LPPWAPPGDE LIHISGSFSQ VRKALLAVST CLQDNPRPDT HNIPIGRPFG
201: LPGSGTGCPP GMDPHSQRSY LPPHIPDYHT RNYPSNAGPP GPRFFFEQEI VFRMIILNEM VGSIIGKGGS TIRALQSETG ACIKILEPVA DSDERVVAIT
301: ARENSDMLHS PAQDAVVRVY SRISEASIDR SSHTPARLLV PSQHIGCLLG KGGSIISEMR KITGANIRIF GNEQIPRCAQ RNDEMVQVTG SFQSIQDALL
401: HITGRIRDVI LPKPHPSGGM PPYPPVGNIP VHQSRQEQPP PHLHPSGGMP PYPMHPFRPD APMGHFEMGD HRPPPVHSME YMGADRMPYL YGVEQGGPRP
501: FLEQPSPRTC PPEAPRTNSE VPRNMSDAVP ATDFRKGPVA IENQVATPTG TTEVIIPCNY IGFVCGNNGS EIEEIEKMSG ASITVHDPKA GDANSKVVIC
601: GDPEETKKAQ SLIHAFIFCG LYQT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.