Factsheet for Zm00001d046033_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001933_P001
Zm00001d007799_P001
Zm00001d012549_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d030659_P003
Zm00001d032312_P001
Zm00001d033511_P002
Zm00001d036796_P004
Zm00001d041592_P002
Zm00001d041650_P001
Zm00001d046740_P001
Zm00001d050595_P001
Zm00001d053682_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	Zm00001d012549_P001	AT3G60360.1	21798944
AT5G53060.1	Zm00001d041650_P001	AT3G60360.1	21798944
AT5G53060.1	Zm00001d050595_P001	AT3G60360.1	21798944
AT5G53060.1	Zm00001d030659_P003	AT4G24680.1	21798944
AT5G53060.1	Zm00001d041592_P002	AT4G24680.1	21798944
AT5G53060.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G53060.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G53060.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G53060.1	Zm00001d033511_P002	AT5G04280.1	21798944
AT5G53060.1	Zm00001d001933_P001	AT5G06770.1	21798944
AT5G53060.1	Zm00001d032312_P001	AT5G06770.1	21798944
AT5G53060.1	Zm00001d036796_P004	AT5G06770.1	21798944
AT5G53060.1	Zm00001d046740_P001	AT5G06770.1	21798944
AT5G53060.1	Zm00001d053682_P001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20038	Sorghum	nucleus	93.55	93.41
Zm00001d037055_P003	Maize	nucleus	91.15	82.16
HORVU7Hr1G082230.1	Barley	nucleus	75.71	80.67
Os06t0342500-01	Rice	cytosol	79.61	80.21
TraesCS7A01G333800.1	Wheat	nucleus	80.06	79.94
TraesCS7D01G341400.1	Wheat	nucleus	80.36	79.64
TraesCS7B01G245400.2	Wheat	nucleus	80.06	75.21
GSMUA_Achr2P15270_001	Banana	nucleus	59.97	57.55
KRH53532	Soybean	nucleus	48.28	49.77
KRH64403	Soybean	nucleus	47.83	49.53
VIT_16s0098g01660.t01	Wine grape	nucleus	47.98	48.41
Solyc03g082980.2.1	Tomato	nucleus	47.23	47.16
AT5G53060.1	Thale cress	nucleus	45.58	46.63
CDX96185	Canola	nucleus	44.23	46.02
PGSC0003DMT400047665	Potato	nucleus	46.93	45.63
Bra003085.1-P	Field mustard	nucleus	43.18	45.07
Bra022624.1-P	Field mustard	nucleus	44.53	44.93
CDY27030	Canola	nucleus	44.68	44.81
CDY56908	Canola	nucleus	42.58	44.65
CDY49453	Canola	nucleus	42.58	44.24
Zm00001d029328_P002	Maize	nucleus	18.44	22.74
Zm00001d024270_P001	Maize	nucleus	20.84	21.99
Zm00001d049390_P001	Maize	nucleus	20.39	21.55
Zm00001d006055_P002	Maize	plastid	18.89	20.19
Zm00001d009014_P004	Maize	nucleus	20.84	19.72
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	12.74	19.27
Zm00001d029973_P001	Maize	plasma membrane	12.44	18.53
Zm00001d013963_P002	Maize	nucleus	22.49	18.38
Zm00001d019538_P002	Maize	plastid	18.44	18.22
Zm00001d030968_P006	Maize	extracellular	13.04	17.13
Zm00001d003290_P002	Maize	mitochondrion	5.7	16.59
Zm00001d032597_P006	Maize	golgi, plasma membrane	22.94	15.52
Zm00001d015093_P001	Maize	cytosol	10.04	14.32
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	13.19	13.39
Zm00001d010815_P001	Maize	mitochondrion	6.0	11.43
Zm00001d014180_P004	Maize	cytosol	10.94	11.28

Protein Annotations

EntrezGene:103638431	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	ProteinID:AQL03621.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	UniProt:K7W8X7	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000220D589	EnsemblPlantsGene:Zm00001d046033	EnsemblPlants:Zm00001d046033_P001	EnsemblPlants:Zm00001d046033_T001
SEG:seg	:	:	:	:	:

Description

RNA-binding KH domain-containing protein

Coordinates

chr9:+:57291248..57324329

Molecular Weight (calculated)

72145.4 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.444

Length

667 amino acids

Sequence
(BLAST)

001: MDRSRSKRGY HYDQDSPPPR SKQRFDRRSG GGQNANSSYH RRGPLGGGGS DRRGFLPPAP APPPPPPPPP LPPSSATAGG GAGPTTTTTS FRILCPECKA
101: YGFPPGFVAK VRDDSGALVT VHPPFAGDYV RVIETVDGAR READGRPPMF SPAQEALLMV HRRILETDAD DGDEDGEYGP RGKDSRDRGK TTTRLIVPKM
201: HVGCLLGKGG KIIEQMRMET KTHIRILPRD QHTPRCVSLS EEVVQVVGDG NCVKKAVAII TDRLKESLHR DRGPFRGRMN SPEPRISQED DYLGVSQMPA
301: YEESLGRSDQ IRNNTSMEPP GYEFDSNDGK VIEHPDILYD DIIFRILCPN DKVDNLVATN DGILEMLQAD VGVDVRLSDI IAGSDERVVI ITSREGPDHE
401: LFPAQEAVLH IQTHIVDLGP DKDNIITTRL LVPSSEIACF DGREGSLSDI QRQTSANVQI LPKEDLPLCA LESDELIQIV GEISAARNAL IQVTTKLRSF
501: LYREMSGPIQ VGNINVHGAI SPVAGSPGGP NLGNDMPMSA YHQASQLATS WHSKDSGGSA SGSFDQGSNI IDEIRQGATK RFAVPLVTRS TLEVVIPNSA
601: VASLTMRAGS KLAQISEISG ATVTLAEDRP DILEKVVRIS GTPEQASKAE NLLQGFILSI PDDIPSG

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.