Factsheet for PGSC0003DMT400047665

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021078
PGSC0003DMT400025445
PGSC0003DMT400029683
PGSC0003DMT400043581
PGSC0003DMT400046782
PGSC0003DMT400060957
PGSC0003DMT400079815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	PGSC0003DMT400021078	AT3G60360.1	21798944
AT5G53060.1	PGSC0003DMT400046782	AT4G24680.1	21798944
AT5G53060.1	PGSC0003DMT400043581	AT5G04280.1	21798944
AT5G53060.1	PGSC0003DMT400079815	AT5G04280.1	21798944
AT5G53060.1	PGSC0003DMT400025445	AT5G06770.1	21798944
AT5G53060.1	PGSC0003DMT400029683	AT5G06770.1	21798944
AT5G53060.1	PGSC0003DMT400060957	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082980.2.1	Tomato	nucleus	95.34	97.9
VIT_16s0098g01660.t01	Wine grape	nucleus	65.31	67.78
KRH64403	Soybean	nucleus	63.41	67.55
KRH53532	Soybean	nucleus	63.56	67.39
CDX96185	Canola	nucleus	55.98	59.91
AT5G53060.1	Thale cress	nucleus	56.41	59.36
CDY56908	Canola	nucleus	54.08	58.33
Bra003085.1-P	Field mustard	nucleus	54.08	58.06
Bra022624.1-P	Field mustard	nucleus	55.83	57.94
CDY27030	Canola	nucleus	55.98	57.74
CDY49453	Canola	nucleus	53.79	57.48
GSMUA_Achr2P15270_001	Banana	nucleus	53.06	52.37
HORVU7Hr1G082230.1	Barley	nucleus	45.19	49.52
Os06t0342500-01	Rice	cytosol	45.77	47.43
TraesCS7A01G333800.1	Wheat	nucleus	46.06	47.31
TraesCS7D01G341400.1	Wheat	nucleus	46.06	46.95
Zm00001d046033_P001	Maize	nucleus	45.63	46.93
KXG20038	Sorghum	nucleus	45.48	46.71
TraesCS7B01G245400.2	Wheat	nucleus	46.06	44.51
Zm00001d037055_P003	Maize	nucleus	44.61	41.35
PGSC0003DMT400087680	Potato	plastid	9.91	27.31
PGSC0003DMT400012623	Potato	nucleus, plastid	26.82	27.26
PGSC0003DMT400083772	Potato	plastid	25.22	26.91
PGSC0003DMT400003371	Potato	nucleus	21.14	26.8
PGSC0003DMT400064701	Potato	nucleus	21.14	26.13
PGSC0003DMT400047374	Potato	nucleus	19.97	25.7
PGSC0003DMT400041750	Potato	plastid	21.87	24.47
PGSC0003DMT400074198	Potato	plastid	15.31	23.65
PGSC0003DMT400076798	Potato	nucleus	20.7	22.9
PGSC0003DMT400066836	Potato	nucleus, plastid	12.1	18.65
PGSC0003DMT400038635	Potato	cytosol	3.64	17.12
PGSC0003DMT400076105	Potato	plastid	10.93	16.23
PGSC0003DMT400051668	Potato	cytosol	12.1	16.21
PGSC0003DMT400051262	Potato	nucleus	11.08	15.14
PGSC0003DMT400046406	Potato	cytosol	10.35	12.03

Protein Annotations

EntrezGene:102596441	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445
GO:GO:0010468	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0031053	GO:GO:0040029
GO:GO:0070878	GO:GO:1900150	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1BL79	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400018527	PGSC:PGSC0003DMG400018527	EnsemblPlants:PGSC0003DMT400047665	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	TMHMM:TMhelix	UniParc:UPI000296E4CC
SEG:seg	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018527]

Coordinates

chr3:+:48142170..48149437

Molecular Weight (calculated)

75472.8 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.426

Length

686 amino acids

Sequence
(BLAST)

001: MDRSRSKRYY YDQDYESENL PRTKQRYNNP HHYAPTHHRR PVSGGGGGGR KMQDPALMVT TTYRILCHDV KAGGVIGKSG SIIKAIRQHT GAWVNVHELI
101: PGDDERIIEI SDTRRRDPDG RMPVFSPAQE ALLMIHERIL DSDSGGGGGG YSGGMDVEEE FRMRGVSGNN RAVTRLVVTR MHVGCLLGKG GKIIEQMRIE
201: TKTHIRILPR DHSLPRCVSM SEEIVQVVGE INAVKKAVEI ISSRLRESQH RDRGHFPGRP HSPERFGPPD DEFIPHMNST ARRTSENGSA FGSRLPAGMS
301: GGRSNNYSSS SSGYAIESGI APNNDNGQVM YVEDLVFRIL CPVDKVDTVA GESDGIIELL QNEIGVDVKI LNPVASSDEQ VIIISSDEGP DDELFPAQEA
401: LLHIQTRIVD LVPEKENVIT TRLVVQTDEV ECLGGRDGLL SDMQKITGAT VKILPKEELP PCVSRTDEVI QIVGEIKAAR EALVEVTSRL RSFTYREFFQ
501: KDIPSPAIPA SSPARSTIGA DKNSFNNTSP SQQNYSVNDV PTSIYQNTPA KPIAQPVKET GASASEIAKQ NESERREDIP SGLNRMHVTL VTRSILEVVI
601: PPHAAPKLIT KSRNKLAQIS ELSGANVKLI EDRPEVTDKI IQISGTPEQA ERAQSLLQGF ILSSKYLYSL YVAVVVSIFI LCSGRP

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.