Factsheet for PGSC0003DMT400038635

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046406	Potato	cytosol	46.58	11.53
PGSC0003DMT400087680	Potato	plastid	17.12	10.04
PGSC0003DMT400076105	Potato	plastid	31.51	9.96
PGSC0003DMT400051668	Potato	cytosol	31.51	8.98
PGSC0003DMT400051262	Potato	nucleus	28.77	8.37
PGSC0003DMT400066836	Potato	nucleus, plastid	22.6	7.42
PGSC0003DMT400064701	Potato	nucleus	26.03	6.85
PGSC0003DMT400003371	Potato	nucleus	25.34	6.84
PGSC0003DMT400047374	Potato	nucleus	24.66	6.75
PGSC0003DMT400041750	Potato	plastid	23.97	5.71
PGSC0003DMT400076798	Potato	nucleus	19.86	4.68
PGSC0003DMT400083772	Potato	plastid	20.55	4.67
PGSC0003DMT400012623	Potato	nucleus, plastid	20.55	4.44
PGSC0003DMT400074198	Potato	plastid	11.64	3.83
PGSC0003DMT400047665	Potato	nucleus	17.12	3.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400038635	EnsemblPlantsGene:PGSC0003DMG400014924	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132
PFAM:PF00013	PFscan:PS50084	PGSC:PGSC0003DMG400014924	SUPFAM:SSF54791	UniParc:UPI000295EA02	UniProt:M1B771
MapMan:35.1	:	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014924]

Coordinates

chr10:-:21196509..21197603

Molecular Weight (calculated)

15972.5 Da

IEP (calculated)

6.907

GRAVY (calculated)

0.126

Length

146 amino acids

Sequence
(BLAST)

001: MASVEQIQNG SLVTHDLENP QVKPKEADAG SVKIVPKVSI EKPKWPGWPG SCVFRLIVPV LKVGSIIWCK GELVKKMCEE TGAKICVLDG PPSSRDRVAA
101: YIGIADHFHD ALFVPLDRPF TCMFTAHSVL LSVQSLFVDQ FGESPI

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.