Factsheet for PGSC0003DMT400051262

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066120.2.1	Tomato	nucleus	92.23	94.11
PGSC0003DMT400051668	Potato	cytosol	67.73	66.41
VIT_07s0141g00800.t01	Wine grape	cytosol	52.79	61.2
GSMUA_Achr7P01590_001	Banana	nucleus	50.6	57.73
KRH67322	Soybean	nucleus	56.57	53.69
GSMUA_Achr5P03200_001	Banana	cytosol	28.29	53.58
KRG95633	Soybean	nucleus	57.17	53.45
KRH71306	Soybean	nucleus	52.39	53.13
KRH32136	Soybean	cytosol	57.37	50.97
TraesCS4B01G069700.1	Wheat	nucleus	48.8	47.95
TraesCS4D01G068400.1	Wheat	nucleus	48.61	47.47
Os03t0627500-01	Rice	cytosol	48.01	47.25
TraesCS4A01G245800.1	Wheat	nucleus	48.41	46.29
TraesCS5D01G071000.1	Wheat	nucleus	47.61	46.05
TraesCS5B01G066800.1	Wheat	nucleus	47.61	45.96
EES16283	Sorghum	cytosol	46.41	45.78
TraesCS5A01G059500.1	Wheat	cytosol	47.21	45.58
Zm00001d030968_P006	Maize	extracellular	46.02	45.47
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	47.01	43.54
OQU91315	Sorghum	plastid	38.84	40.12
HORVU1Hr1G036300.1	Barley	cytosol	12.95	35.71
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	46.61	35.62
PGSC0003DMT400076105	Potato	plastid	29.68	32.25
Os12t0597600-01	Rice	cytosol	10.16	30.72
PGSC0003DMT400046406	Potato	cytosol	35.26	30.0
PGSC0003DMT400038635	Potato	cytosol	8.37	28.77
Zm00001d003290_P002	Maize	mitochondrion	11.95	26.2
EER94248	Sorghum	nucleus	30.68	26.19
TraesCS1D01G134700.1	Wheat	cytosol	30.08	25.17
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	29.88	25.04
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	29.88	25.04
Os10t0414700-01	Rice	nucleus	30.28	24.4
Zm00001d014180_P004	Maize	cytosol	30.88	23.96
PGSC0003DMT400087680	Potato	plastid	10.76	21.69
HORVU1Hr1G036280.1	Barley	cytosol	16.93	20.73
PGSC0003DMT400066836	Potato	nucleus, plastid	18.13	20.45
Zm00001d010815_P001	Maize	mitochondrion	13.74	19.71
PGSC0003DMT400047374	Potato	nucleus	20.92	19.7
PGSC0003DMT400003371	Potato	nucleus	19.92	18.48
PGSC0003DMT400064701	Potato	nucleus	19.52	17.66
PGSC0003DMT400076798	Potato	nucleus	18.33	14.84
PGSC0003DMT400083772	Potato	plastid	16.93	13.22
PGSC0003DMT400012623	Potato	nucleus, plastid	17.73	13.19
PGSC0003DMT400041750	Potato	plastid	14.74	12.07
PGSC0003DMT400047665	Potato	nucleus	15.14	11.08
PGSC0003DMT400074198	Potato	plastid	8.37	9.46

Protein Annotations

EntrezGene:102603965	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1BRI5	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400019909	PGSC:PGSC0003DMG400019909	EnsemblPlants:PGSC0003DMT400051262	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000296E924	RefSeq:XP_015166061.1
SEG:seg	:	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019909]

Coordinates

chr9:+:49534698..49543622

Molecular Weight (calculated)

53770.8 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.594

Length

502 amino acids

Sequence
(BLAST)

001: MADEKFEQPE MGNLHDTENL DNMNSVQDND NVNDKDNVHN ADHVHDADHV HDAGHVHNMN NIHDSETIPA VNNAPEETHH SEEVKVTPTD AGTGEEKKWP
101: GWPGQNVFRM LIPIQKVGGV IGRKGEYIKK TCEETKARIK VLDGPPGTTE RAVMISAKEE PSLLIPPAMD GLLKVHKQIV DVDSDSANAP PGAGRSVTTR
201: LLVAASQAGN LIGKQGSTIK SIQDTSQCTI RVVGQEHLPL FALPDDNVVE IQGEPAGVHK AVEMVASHLR KFLVDHSVVG LFEMQMQMPN ARSNQNRPPA
301: GPTQSWAPPP SSFPGSAGGG SGFGPNTRYM PPARQFDNYF PPVDMPPLEK KPRQGPSPYS RDASMGTYGT NVQTQQSMVT KVTQNMQIPL SYADAVIGTS
401: GSNISYIRRA SGASIAIQET RGVPGEMTVE ITGSASQVQT AQQLIQNSVA DAASSMQNTA AGPPSQGYYP HSQGPVYTSP SGDPGHPSGA DYGSMYGSSY
501: GY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.