Factsheet for TraesCS5B01G066800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G071000.1	Wheat	nucleus	99.42	99.61
TraesCS5A01G059500.1	Wheat	cytosol	98.65	98.65
EES16283	Sorghum	cytosol	70.38	71.91
Zm00001d030968_P006	Maize	extracellular	69.04	70.67
TraesCS4B01G069700.1	Wheat	nucleus	65.77	66.93
GSMUA_Achr7P01590_001	Banana	nucleus	54.23	64.09
Os12t0597600-01	Rice	cytosol	19.62	61.45
GSMUA_Achr5P03200_001	Banana	cytosol	30.58	60.0
Solyc01g097010.2.1	Tomato	nucleus	40.0	57.3
KRG97000	Soybean	nucleus	48.65	56.73
Bra001111.1-P	Field mustard	cytosol	42.5	56.67
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	48.08	56.43
VIT_07s0141g00800.t01	Wine grape	cytosol	44.23	53.12
Solyc06g084000.2.1	Tomato	nucleus	23.46	51.48
VIT_14s0081g00440.t01	Wine grape	cytosol	49.23	50.1
Solyc09g066120.2.1	Tomato	nucleus	45.19	47.76
PGSC0003DMT400051668	Potato	cytosol	46.92	47.66
PGSC0003DMT400051262	Potato	nucleus	45.96	47.61
KRH67322	Soybean	nucleus	45.19	44.42
KRH71306	Soybean	nucleus	41.92	44.04
KRG95633	Soybean	nucleus	45.0	43.58
CDY64706	Canola	nucleus	32.88	42.33
CDX74180	Canola	cytosol	45.77	42.27
CDY40663	Canola	cytosol	45.77	42.27
KRH32136	Soybean	cytosol	45.58	41.95
AT3G04610.2	Thale cress	cytosol	46.54	41.94
TraesCS1B01G229900.1	Wheat	cytosol	32.5	37.64
Solyc06g084010.2.1	Tomato	nucleus	20.58	33.13
TraesCS6B01G113100.1	Wheat	cytosol	25.38	28.27
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	31.92	27.71
TraesCS4B01G166500.2	Wheat	nucleus	18.27	16.87
TraesCS5B01G551800.1	Wheat	nucleus	18.85	15.53
TraesCS3B01G580700.1	Wheat	nucleus	18.27	15.06
TraesCS3B01G189700.1	Wheat	nucleus	18.85	13.84
TraesCS7B01G245400.2	Wheat	nucleus	18.08	13.24
TraesCS5B01G276400.1	Wheat	plastid	14.23	11.84
TraesCS1B01G181000.3	Wheat	nucleus	17.12	10.58

Protein Annotations

EnsemblPlants:TraesCS5B01G066800.1	EnsemblPlantsGene:TraesCS5B01G066800	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5B:-:74988499..74994319

Molecular Weight (calculated)

55443.3 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.688

Length

520 amino acids

Sequence
(BLAST)

001: MDGPAETPAV TEHEMSEIPE PTSGEQADAS IEEQANPESD VPEQIKEEAE NTSDEEPKGT NNEESGNPSD EAQVTVKDED MGDQNSEDQA IRSLEEPAEA
101: EQLANVETED TKWPGWPGES VFRVLVSAQK VGALIGRKGE FIKRMCDESK ARIKILDGPP GVPERAVMIS AKDEPDALVP PAIDGLLRVH NRITDGLDSE
201: TDQAQRGAGP AGPTRLLVPA SQAGSLIGKQ GATIKSIQDA SKCALRILEN VPPVALNDDR VVEIQGEPHD VHKAVELIAS HLRKFLVDRS VLPLFEMQMK
301: VHSAPREQPM PAPQQWGPPP PWSHPPNIPP SGPGYGGNPH FMPPRPQDNY YPPPDVHHVE KQPHYGISSY GRDANPTAAP TSGNQHLSHG SSQISQKMQV
401: PLSYADAVIG SAGANISYIR KHSGATISIQ EGVPGEMTVE IAGSASQVQT AQQLIKNFMA EASPQVPPPG PAPPSQPVDS GYNSYPPYGG PSYATPPGGA
501: GPTPHNGGGY GAHYPPNYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.