CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74180	Canola	cytosol	88.12	63.23
CDY40663	Canola	cytosol	87.38	62.7
AT3G04610.2	Thale cress	cytosol	85.89	60.14
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	51.24	46.73
KRG97000	Soybean	nucleus	51.49	46.64
VIT_14s0081g00440.t01	Wine grape	cytosol	56.68	44.81
Solyc01g097010.2.1	Tomato	nucleus	39.36	43.8
GSMUA_Achr7P01590_001	Banana	nucleus	45.05	41.36
OQU91315	Sorghum	plastid	44.55	37.04
Os03t0627500-01	Rice	cytosol	46.04	36.47
TraesCS4B01G069700.1	Wheat	nucleus	45.79	36.2
TraesCS4D01G068400.1	Wheat	nucleus	45.54	35.8
EES16283	Sorghum	cytosol	44.55	35.36
TraesCS4A01G245800.1	Wheat	nucleus	45.54	35.05
Zm00001d030968_P006	Maize	extracellular	43.81	34.84
HORVU1Hr1G036300.1	Barley	cytosol	15.35	34.07
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	45.54	33.95
TraesCS5D01G071000.1	Wheat	nucleus	42.33	32.95
TraesCS5A01G059500.1	Wheat	cytosol	42.33	32.88
TraesCS5B01G066800.1	Wheat	nucleus	42.33	32.88
Os12t0597600-01	Rice	cytosol	12.87	31.33
GSMUA_Achr5P03200_001	Banana	cytosol	18.32	27.92
CDX99471	Canola	nucleus	14.85	27.91
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	43.81	26.94
Zm00001d003290_P002	Maize	mitochondrion	13.61	24.02
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	27.72	23.33
CDY42768	Canola	cytosol	27.48	22.52
CDX89376	Canola	cytosol	23.51	22.35
CDX92741	Canola	cytosol	27.23	22.31
CDY65294	Canola	cytosol	23.27	21.41
EER94248	Sorghum	nucleus	29.21	20.07
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	28.22	19.03
TraesCS1D01G134700.1	Wheat	cytosol	28.22	19.0
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	27.97	18.86
Zm00001d014180_P004	Maize	cytosol	28.71	17.93
Zm00001d010815_P001	Maize	mitochondrion	15.1	17.43
Os10t0414700-01	Rice	nucleus	26.73	17.34
CDY03018	Canola	nucleus	17.33	14.96
CDY39336	Canola	mitochondrion	17.33	14.8
CDY49107	Canola	nucleus	17.08	14.53
CDX81615	Canola	cytosol	16.34	14.38
CDX69536	Canola	nucleus	18.56	14.1
CDY60930	Canola	nucleus	18.56	14.1
CDY33769	Canola	nucleus	16.83	14.02
CDX70604	Canola	nucleus	18.81	13.1
HORVU1Hr1G036280.1	Barley	cytosol	12.87	12.68
CDX78623	Canola	nucleus	18.56	12.5
CDY45180	Canola	cytosol	12.87	12.29
CDX78846	Canola	nucleus	17.33	12.2
CDX77643	Canola	nucleus	18.81	11.89
CDY33460	Canola	nucleus	18.81	11.86
CDY46555	Canola	plastid	15.59	10.84
CDY52947	Canola	plastid	15.35	10.76
CDY56908	Canola	nucleus	15.84	10.06
CDY49453	Canola	nucleus	15.84	9.97
CDX96185	Canola	nucleus	14.85	9.36
CDY27030	Canola	nucleus	15.1	9.17
CDX84522	Canola	nucleus	16.09	8.77
CDY13742	Canola	mitochondrion	12.62	8.15
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	12.13	7.77
CDX89490	Canola	cytosol	11.63	7.59
CDY25609	Canola	cytosol	11.63	7.57
CDX99470	Canola	nucleus	0.99	1.48
CDY51849	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078JGC1	UniProt:A0A078JGC1	EnsemblPlants:CDY64706	ProteinID:CDY64706
ProteinID:CDY64706.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00042578001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF224	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE42C5	SEG:seg

Description

BnaCnng44620DBnaCnng44620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGC1]

Coordinates

chrLK034525:-:24741..27535

Molecular Weight (calculated)

44167.7 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.738

Length

404 amino acids

Sequence
(BLAST)

001: MSDAEDQQNF VAHSGDEVPD HGLDEFHNGL EYQVHDETLG HHQPYEVQDP ILEPHQYQPR DQEQYQLQHQ AHGEAQDHDG NDGGDQVDEG EEGVPEHVES
101: LQKAEPERDS TVGGEEKRWP GWPGETVFRM LVPPQKVGSI IGRKGDVIKK IVEETRARIK ILDGPPGTTE RAVMVSGKEE PESSLPPSMD GLLRVHMRIV
201: DGLDGEASQA PPPTKVSTRL LVPASQAGSL IGKQGATVKA IQEAAGCVVI VGSEDLPVFA LQDDRAVEVV GEPTSVHKSL ELIASHLRKF LVDRSIIPYF
301: ESQQMQKPTR QMDHMPPPPS HQSWGPPQGH APSGGGGGPG YGHNPAPYMQ QPPRLDSYYP PPMEKQPHQG ISAYGRETPM NVHVSSAPPM AAQQVTQQIQ
401: IPLS

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.