CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008709.1-P	Field mustard	nucleus	95.49	98.26
CDY60930	Canola	nucleus	92.86	92.86
AT5G15270.2	Thale cress	nucleus	83.46	81.02
CDX70604	Canola	nucleus	84.21	77.24
CDX78623	Canola	nucleus	84.02	74.5
VIT_14s0108g01040.t01	Wine grape	nucleus	61.65	59.85
KRG93559	Soybean	nucleus	61.65	59.85
KRH40065	Soybean	nucleus	60.15	59.26
KRH58152	Soybean	cytosol	14.1	59.06
KRH18467	Soybean	nucleus	60.34	58.58
KRH01196	Soybean	nucleus	59.77	58.56
PGSC0003DMT400003371	Potato	nucleus	58.08	57.12
PGSC0003DMT400064701	Potato	nucleus	59.21	56.76
Solyc02g088120.2.1	Tomato	nucleus	50.75	51.43
Solyc02g067210.2.1	Tomato	nucleus	59.02	50.97
CDX81615	Canola	cytosol	43.23	50.11
CDY33769	Canola	nucleus	45.3	49.69
VIT_09s0002g00070.t01	Wine grape	mitochondrion	11.84	49.22
CDY49107	Canola	nucleus	43.8	49.05
CDY39336	Canola	mitochondrion	43.23	48.63
CDY03018	Canola	nucleus	41.73	47.44
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	20.86	47.03
CDY45180	Canola	cytosol	36.65	46.1
VIT_14s0006g00030.t01	Wine grape	cytosol	21.99	41.34
CDY51849	Canola	cytosol	7.89	39.62
CDX99471	Canola	nucleus	13.35	33.02
CDX78846	Canola	nucleus	27.44	25.44
CDY33460	Canola	nucleus	29.14	24.18
CDX77643	Canola	nucleus	28.76	23.94
CDY46555	Canola	plastid	25.0	22.89
CDY52947	Canola	plastid	24.62	22.74
CDX99470	Canola	nucleus	11.28	22.14
CDY56908	Canola	nucleus	26.32	22.01
CDX96185	Canola	nucleus	26.13	21.68
CDY49453	Canola	nucleus	26.13	21.65
CDY27030	Canola	nucleus	25.75	20.6
CDY13742	Canola	mitochondrion	23.68	20.13
CDY25609	Canola	cytosol	23.31	19.97
CDX89490	Canola	cytosol	23.12	19.87
CDX84522	Canola	nucleus	27.63	19.84
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	23.12	19.49
CDX89376	Canola	cytosol	15.04	18.82
CDY64706	Canola	nucleus	14.1	18.56
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	16.73	18.54
CDY65294	Canola	cytosol	15.23	18.45
CDY42768	Canola	cytosol	16.35	17.65
CDX92741	Canola	cytosol	16.35	17.65
CDY40663	Canola	cytosol	18.05	17.05
CDX74180	Canola	cytosol	18.05	17.05

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078BXR2	EnsemblPlants:CDX69536	ProteinID:CDX69536
ProteinID:CDX69536.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00135538001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EDD766	SEG:seg

Description

BnaA10g18850D

Coordinates

chrLK031790:-:684896..687285

Molecular Weight (calculated)

57825.3 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.460

Length

532 amino acids

Sequence
(BLAST)

001: MSPEHRDTHW KRSRPQSDDD DDTGSKRRHR GGDDRDSLAI DTVFRYLCPV KKIGSVIGRG GDIVKQLRME TRAKIKIGEA VTGCDERVVT IFSASDETNE
101: VGDGERVLLS PAQDALFRVH DRVVAADGGD GSDGEKNVTA KMLVPSDQIG CVLGRGGQVV QNIRSETGAH IRIIKDRNMP LCALSSDELI QISGEVMNVK
201: KALHQIASRL HENPSRTQNI LSSAPPLMSH ACGSRIVGIA PLMDPYSRDL SRPLYQALRN DPPAATDFYI RLVSPADNIA SVIGKGGALI NQLRQETRAT
301: IKVDSARTEG NDCLITISAR EVFDDAYSPT IEAAMRLQSK CSDKVERDSG LVSFTTRLLV PSSRIGCLLG KGGAIITEMR RMTKANIRVL GKDNLPKVAS
401: GDDEMVQISG EFDVAKDALI QITSRLRANV FDREGSVSTL MPVLPYVPVA LDAGDRLDYD RRDSRRPERS NHYPGGYGSS GLSEGYSPYG ARVGGSSSSS
501: TYGVYGGYAS GRSGSSGLYS HSSSHRRRSY DY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.