Factsheet for Solyc02g088120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003371	Potato	nucleus	84.57	82.07
VIT_09s0002g00070.t01	Wine grape	mitochondrion	16.19	66.41
VIT_14s0108g01040.t01	Wine grape	nucleus	67.81	64.96
Solyc02g067210.2.1	Tomato	nucleus	72.95	62.18
KRG93559	Soybean	nucleus	62.29	59.67
KRH18467	Soybean	nucleus	61.9	59.31
KRH40065	Soybean	nucleus	59.05	57.41
KRH01196	Soybean	nucleus	59.05	57.09
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	25.52	56.78
CDY60930	Canola	nucleus	52.38	51.69
Bra008709.1-P	Field mustard	nucleus	50.29	51.06
AT5G15270.2	Thale cress	nucleus	53.14	50.91
CDX69536	Canola	nucleus	51.43	50.75
Solyc05g007810.2.1	Tomato	nucleus	51.05	50.38
VIT_14s0006g00030.t01	Wine grape	cytosol	26.48	49.12
CDX70604	Canola	nucleus	52.76	47.76
Bra006294.1-P	Field mustard	nucleus	53.14	46.5
CDX78623	Canola	nucleus	52.95	46.33
KRH58152	Soybean	cytosol	10.67	44.09
Solyc12g055790.1.1	Tomato	nucleus	13.14	27.71
Solyc04g077060.2.1	Tomato	nucleus	22.48	24.95
Solyc05g041740.1.1	Tomato	plastid	9.33	23.33
Solyc03g034200.2.1	Tomato	nucleus	30.86	22.91
Solyc08g048500.2.1	Tomato	nucleus	25.33	21.56
Solyc01g106020.2.1	Tomato	plastid	23.62	19.2
Solyc01g097010.2.1	Tomato	nucleus	12.95	18.73
Solyc11g010840.1.1	Tomato	plastid	21.52	18.43
Solyc05g043210.1.1	Tomato	plastid	8.76	18.18
Solyc03g082980.2.1	Tomato	nucleus	22.86	17.96
Solyc07g008490.2.1	Tomato	nucleus	16.38	17.84
Solyc12g055780.1.1	Tomato	cytosol, nucleus	12.19	17.3
Solyc09g066120.2.1	Tomato	nucleus	15.62	16.67
Solyc01g090480.2.1	Tomato	nucleus	13.52	15.99
Solyc06g084000.2.1	Tomato	nucleus	6.67	14.77
Solyc06g084010.2.1	Tomato	nucleus	8.95	14.55
Solyc08g074330.1.1	Tomato	plastid	5.9	13.66
Solyc05g042180.1.1	Tomato	plastid	6.86	13.19
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	6.86	11.25

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	UniProt:K4BBW8	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791
EnsemblPlantsGene:Solyc02g088120.2	EnsemblPlants:Solyc02g088120.2.1	UniParc:UPI00027684D2	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:50306764..50311139

Molecular Weight (calculated)

57063.8 Da

IEP (calculated)

8.850

GRAVY (calculated)

-0.300

Length

525 amino acids

Sequence
(BLAST)

001: MELTFARLDR KICAVFDGLE STACVDTLPF IQYFVMAGRR NSYGKRSHSQ SDYVDYGRNK RRNTGSDKDS FSIGPDDTVY RYLCDEKKIG SIIGRGSEIV
101: KRLRVDTKSK IRIGETVLTV RNVLSLSTAQ DALFKVHEKI VSETVDEDSK DAPQVIVRLL VPSDQIGCVI GKGGQVVQNI LSENGAQIRI LKDNHLPACA
201: LSSDELLQIS GEATVVKKAL YEIAKHLHKN PSRSQHLLAS AAPNIYSSSS LVGHTAGAPI VGIAPLMGFY RGYKGESGDL SRSFYSAPRI ESSSKEFSIC
301: LLCPTANIGG VIGKGGVIIN QIRQESGAAI KVDSFAAEGD DCMISISARR ALRLQPRCSE KVDGDSGLTS LTTRLLVPTS RIGCLIGKRG LPKVAAEDDE
401: MVQISGELAV VKDALIQVTS RLRANLFERE GAESAFVPVP PYLPMTTYSD TLKHESRDSR RHGHSYSAWY GGTTDLPRAD GYGSYSGIQS SNIGYGAYEG
501: YSLGRSGGSW SSRQDPASRR KSYGY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.