Factsheet for Solyc06g084010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051668	Potato	cytosol	72.45	45.7
HORVU1Hr1G036300.1	Barley	cytosol	21.36	37.91
Os12t0597600-01	Rice	cytosol	18.27	35.54
Solyc05g041740.1.1	Tomato	plastid	20.43	31.43
Solyc09g066120.2.1	Tomato	nucleus	41.18	27.03
VIT_07s0141g00800.t01	Wine grape	cytosol	34.37	25.64
KRH71306	Soybean	nucleus	38.08	24.85
Zm00001d003290_P002	Maize	mitochondrion	17.03	24.02
KRG95633	Soybean	nucleus	39.32	23.65
GSMUA_Achr7P01590_001	Banana	nucleus	31.89	23.41
KRH67322	Soybean	nucleus	38.08	23.25
OQU91315	Sorghum	plastid	33.44	22.22
TraesCS4B01G069700.1	Wheat	nucleus	34.06	21.53
TraesCS4D01G068400.1	Wheat	nucleus	33.75	21.21
TraesCS4A01G245800.1	Wheat	nucleus	34.37	21.14
TraesCS5D01G071000.1	Wheat	nucleus	33.44	20.81
Os03t0627500-01	Rice	cytosol	32.82	20.78
KRH32136	Soybean	cytosol	36.22	20.71
TraesCS5A01G059500.1	Wheat	cytosol	33.13	20.58
TraesCS5B01G066800.1	Wheat	nucleus	33.13	20.58
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	33.44	19.93
Solyc12g055790.1.1	Tomato	nucleus	15.17	19.68
EES16283	Sorghum	cytosol	30.65	19.45
Solyc08g074330.1.1	Tomato	plastid	13.62	19.38
Zm00001d030968_P006	Maize	extracellular	30.03	19.09
Solyc05g043210.1.1	Tomato	plastid	14.86	18.97
Zm00001d010815_P001	Maize	mitochondrion	18.27	16.86
Solyc07g008490.2.1	Tomato	nucleus	24.77	16.6
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	32.82	16.13
Solyc01g097010.2.1	Tomato	nucleus	17.96	15.98
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	14.55	14.69
Solyc05g042180.1.1	Tomato	plastid	10.22	12.09
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	21.98	11.85
TraesCS1D01G134700.1	Wheat	cytosol	21.98	11.83
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	21.67	11.69
EER94248	Sorghum	nucleus	21.05	11.56
Solyc01g090480.2.1	Tomato	nucleus	15.17	11.04
Os10t0414700-01	Rice	nucleus	20.74	10.75
Zm00001d014180_P004	Maize	cytosol	20.74	10.36
Solyc05g007810.2.1	Tomato	nucleus	14.86	9.02
Solyc02g088120.2.1	Tomato	nucleus	14.55	8.95
Solyc02g067210.2.1	Tomato	nucleus	15.17	7.95
Solyc08g048500.2.1	Tomato	nucleus	13.62	7.13
Solyc11g010840.1.1	Tomato	plastid	12.69	6.69
Solyc03g034200.2.1	Tomato	nucleus	14.55	6.65
Solyc03g082980.2.1	Tomato	nucleus	13.31	6.44
Solyc01g106020.2.1	Tomato	plastid	12.07	6.04
Solyc04g077060.2.1	Tomato	nucleus	4.95	3.38
GSMUA_Achr5P03200_001	Banana	cytosol	1.55	1.89
Solyc06g084000.2.1	Tomato	nucleus	0.93	1.27
HORVU1Hr1G036280.1	Barley	cytosol	0.62	0.49
Solyc12g055780.1.1	Tomato	cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g084010.2.1	EnsemblPlantsGene:Solyc06g084010.2	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000276B7D1	UniProt:K4CAQ6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:-:49273140..49277670

Molecular Weight (calculated)

35090.7 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.413

Length

323 amino acids

Sequence
(BLAST)

001: MASIKPRIVT LMSRLASTAS FDISSIHQMA EESYQEHDLG NVYNAENVHS AADGHTGEVD NAHTLENIQE MDNAHENLLP EEVKLEPEEV QVAFLQEHPV
101: KLEQEEAQVE SLQEHVIKSE PEEMQVAENG SGGGEEKRWP GWPGENVFRM LVPSQKVGGI IGRKGEYIKK TCEETKARIK VLDGPHGTKE RAKNQRSRLL
201: PSTLSITSAG SPSDNLSKLP YLAINIQKIA PCLVMISARE EPNLSIPPAM DGLLKVHKRI IDVDYDSNAP GGAGKPASTR LLVAATQAAI LIGKQGATVK
301: SIQDESHCTI RVLGGASPCF CPA

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.