Factsheet for Zm00001d030968_P006

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16283	Sorghum	cytosol	91.34	91.16
TraesCS5D01G071000.1	Wheat	nucleus	70.67	69.17
TraesCS5B01G066800.1	Wheat	nucleus	70.67	69.04
TraesCS5A01G059500.1	Wheat	cytosol	70.28	68.65
GSMUA_Achr7P01590_001	Banana	nucleus	54.72	63.18
GSMUA_Achr5P03200_001	Banana	cytosol	31.3	60.0
Bra001111.1-P	Field mustard	cytosol	43.31	56.41
Solyc01g097010.2.1	Tomato	nucleus	39.76	55.65
Os12t0597600-01	Rice	cytosol	18.11	55.42
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	48.03	55.08
KRG97000	Soybean	nucleus	48.23	54.93
VIT_07s0141g00800.t01	Wine grape	cytosol	44.29	51.96
Solyc06g084000.2.1	Tomato	nucleus	24.21	51.9
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	65.35	50.53
VIT_14s0081g00440.t01	Wine grape	cytosol	50.2	49.9
PGSC0003DMT400051668	Potato	cytosol	46.65	46.29
PGSC0003DMT400051262	Potato	nucleus	45.47	46.02
Solyc09g066120.2.1	Tomato	nucleus	44.49	45.94
CDY64706	Canola	nucleus	34.84	43.81
CDY40663	Canola	cytosol	47.64	42.98
CDX74180	Canola	cytosol	47.64	42.98
KRH71306	Soybean	nucleus	41.34	42.42
KRH67322	Soybean	nucleus	44.09	42.34
KRG95633	Soybean	nucleus	44.69	42.27
AT3G04610.2	Thale cress	cytosol	47.44	41.77
KRH32136	Soybean	cytosol	44.88	40.35
Zm00001d029973_P001	Maize	plasma membrane	32.87	37.28
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	32.28	37.19
Solyc06g084010.2.1	Tomato	nucleus	19.09	30.03
Zm00001d015093_P001	Maize	cytosol	25.98	28.21
Zm00001d003290_P002	Maize	mitochondrion	11.81	26.2
Zm00001d014180_P004	Maize	cytosol	31.3	24.57
Zm00001d029328_P002	Maize	nucleus	19.88	18.67
Zm00001d010815_P001	Maize	mitochondrion	12.4	18.0
Zm00001d024270_P001	Maize	nucleus	18.11	14.56
Zm00001d049390_P001	Maize	nucleus	17.72	14.26
Zm00001d009014_P004	Maize	nucleus	19.09	13.76
Zm00001d046033_P001	Maize	nucleus	17.13	13.04
Zm00001d037055_P003	Maize	nucleus	16.93	11.62
Zm00001d006055_P002	Maize	plastid	14.17	11.54
Zm00001d013963_P002	Maize	nucleus	17.72	11.03
Zm00001d019538_P002	Maize	plastid	13.78	10.37
Zm00001d032597_P006	Maize	golgi, plasma membrane	18.11	9.33

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:BT062981	EMBL:BT064514	UniProt:C0P3W2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	ProteinID:ONM01837.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF224	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0001948F72	EnsemblPlantsGene:Zm00001d030968	EnsemblPlants:Zm00001d030968_P006
EnsemblPlants:Zm00001d030968_T006	SEG:seg	:	:	:	:

Description

Flowering locus K homology domain

Coordinates

chr1:+:169609656..169615972

Molecular Weight (calculated)

54206.3 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.681

Length

508 amino acids

Sequence
(BLAST)

001: MDVPVDDPVE NLTGSPSTLG NEEEATTYAN VQDQSKEEPE KLYEEPKDPM QDELGNQGHV SMNNEDVGGQ NKVDQATPTE HGEEAGVKQH DATVPDDKKW
101: PGWPGESVFR ILVPTTKVGA VIGRKGDFIK KMCEESRARI KVLEGPPAVP ERAVMISAKD EPDTELPPAV DGLLRVHRRI TDGLETETDQ PQRATVNTGP
201: TRLLVPASQA GSLIGKQGAT IKSIQDASKC VLRIVENVPP VALNDDRVVE IQGEPHDSHK AVELIASHLR KFLVDRSVLP LFETQIKAHN MHREQPMPPP
301: QAWGPPPPSP WGHPPPNLPP GGPGYVGNPH YMPPRPQENY YPPPDVPPVE KQPHYGISSY GRDAPPSAPP GNQNQAHGSS QVTHSMQVPL SYADAVIGAA
401: GASISYIRRH SGATISIQEG APGEMTVEIT GSASQVQTAQ QLIKNFMAEA SPQGPPAPGP HGQPVDTGYG SYPPYGGASY GSPPGAPAPA PHNGGSYGAA
501: PYSSSYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.