CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	96.41	97.07
Solyc01g097010.2.1	Tomato	nucleus	59.42	73.0
Bra001111.1-P	Field mustard	cytosol	62.56	71.54
VIT_14s0081g00440.t01	Wine grape	cytosol	76.46	66.73
GSMUA_Achr7P01590_001	Banana	nucleus	61.44	62.27
GSMUA_Achr5P03200_001	Banana	cytosol	36.1	60.75
CDX74180	Canola	cytosol	67.04	53.11
AT3G04610.2	Thale cress	cytosol	68.16	52.69
CDY40663	Canola	cytosol	66.37	52.58
CDY64706	Canola	nucleus	46.64	51.49
Os03t0627500-01	Rice	cytosol	56.95	49.8
EES16283	Sorghum	cytosol	56.05	49.12
TraesCS5D01G071000.1	Wheat	nucleus	56.73	48.75
TraesCS4B01G069700.1	Wheat	nucleus	55.83	48.73
TraesCS5B01G066800.1	Wheat	nucleus	56.73	48.65
TraesCS5A01G059500.1	Wheat	cytosol	56.5	48.46
Zm00001d030968_P006	Maize	extracellular	54.93	48.23
TraesCS4D01G068400.1	Wheat	nucleus	55.38	48.05
KRG95633	Soybean	nucleus	57.85	48.04
KRH67322	Soybean	nucleus	56.73	47.83
TraesCS4A01G245800.1	Wheat	nucleus	54.71	46.48
KRH71306	Soybean	nucleus	51.12	46.06
KRH32136	Soybean	cytosol	58.3	46.02
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	55.16	45.39
OQU91315	Sorghum	plastid	45.74	41.98
KRH19104	Soybean	nucleus	37.89	38.76
KRH02776	Soybean	nucleus	37.89	38.76
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	55.61	37.75
KRH12329	Soybean	cytosol, nucleus	37.0	37.33
KRH37335	Soybean	cytosol, nucleus	36.55	36.79
HORVU1Hr1G036300.1	Barley	cytosol	14.57	35.71
Os12t0597600-01	Rice	cytosol	11.88	31.93
EER94248	Sorghum	nucleus	40.58	30.78
KRH58152	Soybean	cytosol	8.74	30.71
Zm00001d003290_P002	Maize	mitochondrion	15.47	30.13
TraesCS1D01G134700.1	Wheat	cytosol	37.89	28.17
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	37.67	28.05
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	37.44	27.88
Zm00001d014180_P004	Maize	cytosol	39.24	27.05
Os10t0414700-01	Rice	nucleus	37.0	26.48
HORVU1Hr1G036280.1	Barley	cytosol	22.87	24.88
KRH00973	Soybean	nucleus, plastid	17.26	21.27
Zm00001d010815_P001	Maize	mitochondrion	16.59	21.14
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	17.49	20.1
KRG93559	Soybean	nucleus	23.32	18.98
KRH18467	Soybean	nucleus	23.09	18.8
KRH01196	Soybean	nucleus	22.87	18.78
KRH40065	Soybean	nucleus	22.42	18.52
KRH58669	Soybean	endoplasmic reticulum, nucleus	21.08	15.14
KRH49838	Soybean	plastid	19.96	15.08
KRH42565	Soybean	nucleus	20.63	14.72
KRH42077	Soybean	plastid	19.28	14.65
KRH53532	Soybean	nucleus	20.63	14.22
KRH64403	Soybean	nucleus	19.51	13.51
KRH39475	Soybean	plastid	17.49	12.77
KRH44614	Soybean	mitochondrion, nucleus	16.14	12.74
KRH74462	Soybean	nucleus	17.49	12.66
KRH21739	Soybean	plastid	20.18	12.59
KRH62129	Soybean	plastid	18.83	12.39
KRH10613	Soybean	plastid	19.51	11.97
KRH47290	Soybean	mitochondrion, nucleus	14.8	11.81
KRH52837	Soybean	plastid	17.71	11.69

Protein Annotations

EntrezGene:100808237	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02012171	EnsemblPlantsGene:GLYMA_19G246200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1NCB1	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRG97000	ProteinID:KRG97000	ProteinID:KRG97000.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF224	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI000233EBBB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49287845..49294587

Molecular Weight (calculated)

47033.7 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.258

Length

446 amino acids

Sequence
(BLAST)

001: MAEVDQYTGG EHEVEETIEV EAEEEMHGGE EAVVVAEKKW PGWPGESVFR MLVPAQKVGG IIGRKGEFIK KIVEETRARV KILDGPPGTV QRAVMISAKE
101: EPGSSVPPAV DGLLRVHKRI IDGLESDFTH APSGVAGKVS TKLLVPASQA GSLIGKQGGT VKSIQEASNC IVRVLGAEDL PIFALQDDRV VEVVGDPTGV
201: HKALELIASH LRKFLVDRGV IPIFEMNMQT ANTHHAEHMP PHQSWGPPQG LPPNVGGGSG FGPPSQYMPP PRQLDSYYPP AEMPPPVDRQ PHQGISAYGR
301: DASIGVHASS NTQSAPSIVT QITQQMQIPL SYADAVIGTA GASISYIRRA SGATVTIQEA RGVPGEMTVE ISGTASQVQT AQQLIQNFMA EAAAAAAAPA
401: QPQTTVPAAD QGYNSYPAHG SLYASPPSNP GHAGGYSSVY GANYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.