CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014180_P004	Maize	cytosol	86.73	78.83
HORVU1Hr1G036300.1	Barley	cytosol	19.73	63.74
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	61.39	60.27
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	61.22	60.1
HORVU1Hr1G036280.1	Barley	cytosol	41.84	60.0
TraesCS1D01G134700.1	Wheat	cytosol	61.05	59.83
Zm00001d003290_P002	Maize	mitochondrion	23.13	59.39
Os10t0414700-01	Rice	nucleus	60.03	56.66
Zm00001d010815_P001	Maize	mitochondrion	25.34	42.57
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	30.78	40.86
KRG97000	Soybean	nucleus	30.78	40.58
VIT_07s0141g00800.t01	Wine grape	cytosol	26.87	36.49
Bra001111.1-P	Field mustard	cytosol	24.15	36.41
Solyc01g097010.2.1	Tomato	nucleus	21.77	35.26
VIT_14s0081g00440.t01	Wine grape	cytosol	30.27	34.83
EES16283	Sorghum	cytosol	27.21	31.43
Solyc09g066120.2.1	Tomato	nucleus	25.68	30.69
PGSC0003DMT400051262	Potato	nucleus	26.19	30.68
EER94472	Sorghum	cytosol	23.47	30.53
KRH67322	Soybean	nucleus	27.21	30.25
KRG95633	Soybean	nucleus	27.21	29.8
PGSC0003DMT400051668	Potato	cytosol	25.51	29.3
KRH71306	Soybean	nucleus	24.66	29.29
CDY64706	Canola	nucleus	20.07	29.21
Solyc06g084000.2.1	Tomato	nucleus	11.39	28.27
CDY40663	Canola	cytosol	26.87	28.06
OQU91315	Sorghum	plastid	23.13	27.98
CDX74180	Canola	cytosol	26.7	27.89
KRH32136	Soybean	cytosol	26.7	27.79
AT3G04610.2	Thale cress	cytosol	27.04	27.56
KXG29352	Sorghum	cytosol	20.24	23.06
Solyc06g084010.2.1	Tomato	nucleus	11.56	21.05
KXG39277	Sorghum	nucleus	17.86	19.37
OQU88922	Sorghum	nucleus, peroxisome, plastid	14.12	12.89
OQU80050	Sorghum	nucleus	13.78	12.88
EES02175	Sorghum	nucleus, plastid	15.48	12.71
KXG38256	Sorghum	nucleus	15.99	11.75
KXG20038	Sorghum	nucleus	12.76	11.23
KXG35952	Sorghum	plastid	10.54	9.97

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EntrezGene:8059631	UniProt:C5WM46	EnsemblPlants:EER94248
ProteinID:EER94248	ProteinID:EER94248.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF152	SMART:SM00322	EnsemblPlantsGene:SORBI_3001G249200	SUPFAM:SSF54791	UniParc:UPI0001A832DE
RefSeq:XP_002467250.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:26854417..26859791

Molecular Weight (calculated)

64812.9 Da

IEP (calculated)

6.539

GRAVY (calculated)

-0.365

Length

588 amino acids

Sequence
(BLAST)

001: MAQMQSSSKE KEVYEVTRKS NEQSVLKLDA VDDEDSGNTT SSAGESKYPG WPGTSVFRML IPAQKVGVII GHKGERVRRL CEETRACVRI IGGHLCAAEQ
101: AVIIFGREQP EEPLPPAMDA LLRVYQQTIN DESLDVGSDG VIVRRILVPS EQAESLIGEH GVMINSIMEA SQTDIRVLDG DLPPVALEED RVVEIWGLPA
201: RVHKALELVA SHLRKYLVDR SVIPLFDRHV PMPILHVDVP PCHYIDYPEG PVHPVSPGYH SVSAEDLQHE QWIDTGYLRG RHPMGNLRHA DTFEYRWEAH
301: TPFRRYRSVT PPNHAITPYG PEASSPMEAY LSAPMELHSH HNLQNRWHAS PVNSTDSVER IRSLISVYGQ QARLQKQTCQ SAKLGKHPQF GVSLHGREAH
401: PTRVSPSDST EQPPSPGVSA CGREASPCFR MHPPTTVENL LHCRVSACGP ETPLPLHLAA TSSTSRSTAA SQVKKKMQVP IFYAEAVIGP AGERIEYIRR
501: TSRSNILISN SDGAMSIEIT GNAATDVLTA EQLIKNFMAE AAAASPGHSF DFIPSYLPAP RSAQADVLAS PGTSEVFSLP ERHLQMIY

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.