CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER90022
EES06473
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	EER90022	AT2G25490.1	21798944
AT1G51580.1	EES06473	AT2G25490.1	21798944
AT1G51580.1	EER88112	AT3G47620.1	21798944
AT1G51580.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006055_P002	Maize	plastid	93.09	92.79
TraesCS5B01G276400.1	Wheat	plastid	78.94	78.56
TraesCS5D01G284200.4	Wheat	plastid	78.62	77.99
Os09t0498600-01	Rice	plastid	77.01	77.76
TraesCS5A01G276800.5	Wheat	plastid	77.97	77.35
HORVU5Hr1G075110.3	Barley	mitochondrion	79.26	76.55
GSMUA_Achr10P...	Banana	nucleus	45.34	41.84
KRH47290	Soybean	mitochondrion, nucleus	37.14	41.32
KRH44614	Soybean	mitochondrion, nucleus	37.3	41.06
PGSC0003DMT400074198	Potato	plastid	28.3	39.64
VIT_09s0054g00450.t01	Wine grape	plastid	44.69	39.49
Solyc12g055780.1.1	Tomato	cytosol, nucleus	23.47	39.46
AT1G51580.1	Thale cress	cytosol, plastid	34.89	34.94
Bra014290.1-P	Field mustard	plastid	31.19	33.39
CDY46555	Canola	plastid	31.19	33.39
CDY52947	Canola	plastid	30.87	33.33
KXG39277	Sorghum	nucleus	21.7	24.91
Solyc12g055790.1.1	Tomato	nucleus	9.32	23.29
PGSC0003DMT400087680	Potato	plastid	9.16	22.89
OQU80050	Sorghum	nucleus	22.35	22.1
EES02175	Sorghum	nucleus, plastid	25.4	22.07
KXG38256	Sorghum	nucleus	27.01	21.0
OQU88922	Sorghum	nucleus, peroxisome, plastid	21.38	20.65
KXG20038	Sorghum	nucleus	20.74	19.31
EER94472	Sorghum	cytosol	10.61	14.6
EES16283	Sorghum	cytosol	11.58	14.15
EER94248	Sorghum	nucleus	9.97	10.54
OQU91315	Sorghum	plastid	8.2	10.49
KXG29352	Sorghum	cytosol	8.68	10.47

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A1B6QDG2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
EnsemblPlants:KXG35952	ProteinID:KXG35952	ProteinID:KXG35952.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF174	SMART:SM00322	EnsemblPlantsGene:SORBI_3002G253600	SUPFAM:SSF54791	UniParc:UPI00081AD1D0	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:63969449..63973897

Molecular Weight (calculated)

66697.5 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.403

Length

622 amino acids

Sequence
(BLAST)

001: MEVLSTPAGA GAAASSSSSS STPSPSTRRP TTTLRLLCPS SRAAALRPSR DLHVDQPPVG DEAVLVISGP DAPAAAVRAW EHVVGHRVEG DEAMGGEEEE
101: REVTGAVGCR MLAAGGQVGC VLGKGGKTVE RMRQESGAQI RVFRNREQLP PFAPPGDELI HISGSFPQVR KALLAVSTCL QDNPRPDTHN IPMGRPFGPP
201: GSGPGCPPGM DPHSQRSYLP PHIPDYHTRN YPNNAGAPGP RFFFEQEIVF RMIILNEMVG SIIGKGGSTI RALQSETGAC IKILELVADS DERVVAISAR
301: ENSDMMHSPA QDAVVRVYSR ISEASMDRSS PTPARLLVPS QHIGCLLGKG GSIITEMRKI TGASIRIFGN EQIPRCAQRN DEMVQVTGSF QSIQDALLHI
401: TGRIRDVILP KPHPSGGMPP YPPVGNIPVH QSRQEPPPPH LHPSGGMPPY PMHSFRPDAP MGHFETGDHR PPPVHSMEYM GADRMPYSYG GEQGGPRPFL
501: EQPSPRTWPP EAPRTNSEAP RNMPDAVLAT DLRKGPVASE NQVATPTSTT TEVVIPCKYI GFVCGNSGSE IEEIRQMSGA SITVHDPKPG DTNSIVVICG
601: DPEQTKKAQS LIHAFIFCGL QT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.