Factsheet for TraesCS5D01G284200.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G181900.1
TraesCS6A01G306500.1
TraesCS6B01G210700.1
TraesCS6B01G334900.1
TraesCS6D01G169200.1
TraesCS6D01G285600.1
TraesCS7A01G377500.1
TraesCS7B01G091900.1
TraesCS7B01G278800.1
TraesCS7D01G187600.1
TraesCS7D01G373800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	TraesCS6A01G181900.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS6B01G210700.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS6D01G169200.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS7A01G377500.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS7B01G278800.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS7D01G373800.1	AT2G25490.1	21798944
AT1G51580.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G51580.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G51580.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G51580.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G51580.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G276800.5	Wheat	plastid	98.09	98.09
TraesCS5B01G276400.1	Wheat	plastid	96.65	96.96
HORVU5Hr1G075110.3	Barley	mitochondrion	95.06	92.55
KXG35952	Sorghum	plastid	77.99	78.62
Os09t0498600-01	Rice	plastid	76.4	77.76
Zm00001d006055_P002	Maize	plastid	76.24	76.6
Solyc12g055780.1.1	Tomato	cytosol, nucleus	25.36	42.97
GSMUA_Achr10P...	Banana	nucleus	45.45	42.28
PGSC0003DMT400074198	Potato	plastid	29.82	42.12
KRH44614	Soybean	mitochondrion, nucleus	37.32	41.42
KRH47290	Soybean	mitochondrion, nucleus	36.84	41.32
VIT_09s0054g00450.t01	Wine grape	plastid	43.06	38.35
AT1G51580.1	Thale cress	cytosol, plastid	35.09	35.43
Bra014290.1-P	Field mustard	plastid	30.94	33.39
CDY46555	Canola	plastid	30.94	33.39
CDY52947	Canola	plastid	30.62	33.33
Solyc12g055790.1.1	Tomato	nucleus	10.05	25.3
PGSC0003DMT400087680	Potato	plastid	9.89	24.9
TraesCS4D01G160700.2	Wheat	nucleus	21.05	23.45
TraesCS5D01G538200.3	Wheat	nucleus	22.81	22.7
TraesCS3D01G519700.1	Wheat	nucleus	22.65	22.5
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	24.88	22.13
TraesCS7D01G341400.1	Wheat	nucleus	22.17	20.65
TraesCS1D01G161200.3	Wheat	nucleus	25.84	19.47
TraesCS1D01G218700.1	Wheat	cytosol	11.0	15.33
TraesCS5D01G071000.1	Wheat	nucleus	11.64	14.07
TraesCS4D01G068400.1	Wheat	nucleus	11.32	13.81
TraesCS1D01G134700.1	Wheat	cytosol	10.53	11.0

Protein Annotations

EnsemblPlants:TraesCS5D01G284200.4	EnsemblPlantsGene:TraesCS5D01G284200	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:-:384866573..384875762

Molecular Weight (calculated)

66402.3 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.344

Length

627 amino acids

Sequence
(BLAST)

001: MEIPPSSAPA GAGGAVAPAT PASSSNPSPP PKRPSITLRL LCPSSRAAAL RPARDLHVEH PPVGDEAVLV VSGPDAPAAA VRVWERVVGH SIGGDEAGEE
101: GEEKEVAGVV GCRMLAAGGQ VGCVLGKGGK TVERMRLESG AQIRVFRNRE QVPPCALQGD ELIHISGSFS AAKKALLLVS TCLQDNPRPD TSNFPSGRPF
201: GPPGSGVGCP PGVDPHSQRS YLPPPHVPDY HARNFSSNGA APGPRFFVEQ EIMFRMICLN DMVGGVIGKG GSTIRALQSE TGASVKVIDP VADSDERIIV
301: ISARENSEMM HSPSQDALIR VYSKISEASM DKSSSVPARL LVPAQHIGCL LGKGGSIIAE MRKVTGASIR IFGNEQIPRC AQRNEELVQV TGSFQSIQDA
401: LRHITGRIRD LIIPPKPHPS GGMPPYPPVG NPSHHQSRQE APPHHSGGMP PYPMHPFRPN PPMGPFDVAD HRPPGPPPSH PMEHMGADRM PYPYGCEQGG
501: PRPFVEQPSP RTWAPEAPAT DAPRSMPDIV PAVDFRKGPG ASSENQVATP ATTTTEVVIP CKYIGFVCGA NDSDLAEIKK ISGAEITVHD PKPGDTNSTV
601: IICGDPEQTK RAQSLIHAFI FCGLYQK

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.