Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G210700.1 | Wheat | cytosol | 98.31 | 98.31 |
| TraesCS6D01G169200.1 | Wheat | cytosol | 97.23 | 97.23 |
| HORVU6Hr1G038430.3 | Barley | plastid | 94.92 | 94.33 |
| EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 86.44 | 85.65 |
| Zm00001d015778_P001 | Maize | cytosol | 83.2 | 83.98 |
| Zm00001d053642_P001 | Maize | cytosol | 83.67 | 83.41 |
| Os02t0200900-01 | Rice | cytosol | 82.59 | 81.21 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 70.11 | 70.11 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 53.31 | 52.91 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 52.54 | 52.3 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 51.77 | 51.38 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 52.39 | 50.9 |
| KRH03688 | Soybean | cytosol | 48.84 | 49.61 |
| KRH20255 | Soybean | cytosol | 48.69 | 49.45 |
| PGSC0003DMT400007545 | Potato | cytosol | 48.07 | 48.98 |
| VIT_11s0016g05410.t01 | Wine grape | cytosol | 49.92 | 48.87 |
| Solyc12g009560.1.1 | Tomato | cytosol | 47.3 | 48.19 |
| KRH15886 | Soybean | cytosol | 47.61 | 47.98 |
| Solyc07g008250.2.1 | Tomato | cytosol, nucleus, peroxisome | 47.3 | 47.89 |
| PGSC0003DMT400079445 | Potato | cytosol, nucleus, peroxisome | 47.3 | 47.82 |
| PGSC0003DMT400040977 | Potato | nucleus | 49.15 | 47.68 |
| KRH05167 | Soybean | cytosol | 44.53 | 47.38 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 48.69 | 47.38 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 48.69 | 47.31 |
| KRH62989 | Soybean | cytosol | 47.3 | 47.23 |
| Bra036542.1-P | Field mustard | cytosol | 44.68 | 47.08 |
| Solyc08g060810.2.1 | Tomato | plastid | 48.23 | 47.07 |
| CDX87090 | Canola | cytosol | 44.38 | 46.75 |
| AT5G25350.1 | Thale cress | cytosol | 44.84 | 46.71 |
| CDY19807 | Canola | cytosol | 44.22 | 46.59 |
| CDX80503 | Canola | cytosol | 44.53 | 46.54 |
| CDX88173 | Canola | cytosol | 44.38 | 46.3 |
| Bra009835.1-P | Field mustard | cytosol | 44.07 | 45.98 |
| KRH61771 | Soybean | cytosol | 44.84 | 45.75 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 44.84 | 45.61 |
| AT2G25490.1 | Thale cress | plastid | 44.07 | 45.54 |
| CDX76980 | Canola | cytosol | 41.76 | 45.24 |
| Bra034254.1-P | Field mustard | cytosol | 43.3 | 45.18 |
| CDY35358 | Canola | cytosol | 42.99 | 44.78 |
| PGSC0003DMT400094835 | Potato | cytosol | 16.18 | 42.86 |
| KRH04870 | Soybean | cytosol | 17.87 | 42.65 |
| PGSC0003DMT400042949 | Potato | cytosol | 36.06 | 42.39 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 29.74 | 42.05 |
| Solyc06g049010.1.1 | Tomato | plastid | 39.29 | 41.13 |
| Solyc06g030610.1.1 | Tomato | cytosol | 16.18 | 38.32 |
| Solyc06g030620.1.1 | Tomato | cytosol | 11.86 | 38.31 |
| TraesCS6A01G234100.2 | Wheat | cytosol | 15.87 | 24.7 |
| TraesCS5A01G091800.2 | Wheat | cytosol | 23.27 | 22.84 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 12.33 | 22.79 |
| TraesCS4A01G142500.3 | Wheat | plastid | 20.96 | 21.62 |
| TraesCS1A01G264900.1 | Wheat | cytosol | 11.71 | 20.54 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 17.1 | 20.52 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 16.64 | 20.49 |
| TraesCS4A01G230600.2 | Wheat | plastid | 12.48 | 20.0 |
| TraesCS5A01G150800.2 | Wheat | mitochondrion | 20.49 | 19.5 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 11.25 | 19.21 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G181900.1 | EnsemblPlantsGene:TraesCS6A01G181900 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PANTHER:PTHR44327 | PANTHER:PTHR44327:SF3 | PFAM:PF13516 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | MapMan:11.5.2.6 | MapMan:19.2.2.8.1.4.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:209266732..209268826
Molecular Weight (calculated)
68042.9 Da
IEP (calculated)
7.014
GRAVY (calculated)
0.280
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAFHAYGDG GCLVSAPAEL SGMFCRGGGA VVQQRKRSLV AASAVAAAAA ECMRASKKQR QPPQPSLDLL PDECLFEVLR RLPGGRERAD SACVSRRWLA
101: LLASIRVSEL GHAAAAAPSL PDLNEEFVME EDTDDSSADP SVERVLEGNE ATDVRLAAMA VVAGSRRGLE KLAIRGSHPT RGVTDQGLLA VARGSPNLCS
201: LALWDVPLVT DAGLAEIAAG CPSLERLDIT SCPLITDKGL AAIAQGCPNL VSLTMEACSG VGNEGLRAIG RCCLKLQAVS IKNCVHVGDQ GISSLVCSAS
301: ASLAKIRLQG LNITDASLAV IGYYGKAVTD LTLARLAAVG ERGFWVMANA AGLQKLRCMS VTSCLGVTDL AITCIAKFCP GLKQLCLRKC GHVSDAGLKA
401: FIESAKVMEN LQLEECNRVT LVGVLACLIN CSHKFRALSL VKCTGVKDVC SAPAQLPVCK SLRFLTIKDC PGFTDASLAV VGMICPQLEQ VDLSGLGEVT
501: DNGLLPLINS SEGNLVKVDL SGCKNITDVA VSSLVKAHGK SVKQVSLEGC SKITDASLFC ISENCTELAG LDLSNCMVSD SGVASLASAN HFKLRALSLF
601: GCSKVTQVSV QFLGSMGKLE GLNLQYCNMI GNHNIASLEK QLWWCDILA
101: LLASIRVSEL GHAAAAAPSL PDLNEEFVME EDTDDSSADP SVERVLEGNE ATDVRLAAMA VVAGSRRGLE KLAIRGSHPT RGVTDQGLLA VARGSPNLCS
201: LALWDVPLVT DAGLAEIAAG CPSLERLDIT SCPLITDKGL AAIAQGCPNL VSLTMEACSG VGNEGLRAIG RCCLKLQAVS IKNCVHVGDQ GISSLVCSAS
301: ASLAKIRLQG LNITDASLAV IGYYGKAVTD LTLARLAAVG ERGFWVMANA AGLQKLRCMS VTSCLGVTDL AITCIAKFCP GLKQLCLRKC GHVSDAGLKA
401: FIESAKVMEN LQLEECNRVT LVGVLACLIN CSHKFRALSL VKCTGVKDVC SAPAQLPVCK SLRFLTIKDC PGFTDASLAV VGMICPQLEQ VDLSGLGEVT
501: DNGLLPLINS SEGNLVKVDL SGCKNITDVA VSSLVKAHGK SVKQVSLEGC SKITDASLFC ISENCTELAG LDLSNCMVSD SGVASLASAN HFKLRALSLF
601: GCSKVTQVSV QFLGSMGKLE GLNLQYCNMI GNHNIASLEK QLWWCDILA
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
Arabidopsis Description
EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.