Factsheet for PGSC0003DMT400042949

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015145
PGSC0003DMT400015148
PGSC0003DMT400022477
PGSC0003DMT400063662
PGSC0003DMT400072522

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	PGSC0003DMT400015145	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400072522	AT3G28715.1	21798944
AT2G25490.1	PGSC0003DMT400063662	AT4G02570.1	14675533
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400063662	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g049010.1.1	Tomato	plastid	77.9	69.35
PGSC0003DMT400089433	Potato	mitochondrion	53.99	64.92
PGSC0003DMT400094835	Potato	cytosol	24.46	55.1
PGSC0003DMT400040977	Potato	nucleus	60.51	49.93
KRH15886	Soybean	cytosol	51.99	44.57
KRH05167	Soybean	cytosol	47.83	43.28
VIT_04s0008g05470.t01	Wine grape	cytosol	51.45	42.58
AT2G25490.1	Thale cress	plastid	48.01	42.2
PGSC0003DMT400007545	Potato	cytosol	48.01	41.6
KRH52439	Soybean	cytosol, nucleus, peroxisome	48.01	41.54
KRH61771	Soybean	cytosol	47.46	41.2
Bra034254.1-P	Field mustard	cytosol	45.65	40.51
CDY35358	Canola	cytosol	45.65	40.45
CDX88173	Canola	cytosol	45.47	40.35
CDX80503	Canola	cytosol	45.29	40.26
CDX76980	Canola	cytosol	43.66	40.23
Bra009835.1-P	Field mustard	cytosol	45.29	40.19
AT5G25350.1	Thale cress	cytosol	44.93	39.81
Bra036542.1-P	Field mustard	cytosol	43.48	38.96
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	45.29	38.94
CDX87090	Canola	cytosol	42.93	38.47
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	45.29	38.23
CDY19807	Canola	cytosol	42.57	38.15
HORVU7Hr1G090240.1	Barley	cytosol	36.59	37.48
GSMUA_Achr6P05220_001	Banana	cytosol	44.2	37.31
GSMUA_Achr4P30680_001	Banana	cytosol	42.75	36.2
Zm00001d015778_P001	Maize	cytosol	42.03	36.08
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	43.66	36.08
TraesCS6A01G181900.1	Wheat	cytosol	42.39	36.06
Os06t0605900-01	Rice	cytosol	40.94	36.04
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	43.48	35.93
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	42.39	35.73
EER90022	Sorghum	cytosol, plastid	40.4	35.62
TraesCS6B01G210700.1	Wheat	cytosol	41.85	35.59
HORVU6Hr1G038430.3	Barley	plastid	42.03	35.53
TraesCS6D01G169200.1	Wheat	cytosol	41.49	35.29
Zm00001d053642_P001	Maize	cytosol	41.49	35.18
Os02t0200900-01	Rice	cytosol	41.85	35.0
TraesCS7B01G278800.1	Wheat	cytosol	40.94	34.93
TraesCS7A01G377500.1	Wheat	cytosol	40.94	34.82
TraesCS7D01G373800.1	Wheat	cytosol	40.94	34.72
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	15.94	33.08
HORVU5Hr1G029670.1	Barley	mitochondrion	27.9	30.02
Zm00001d036880_P003	Maize	cytosol	39.86	29.89
Zm00001d000408_P001	Maize	cytosol	39.13	29.07
HORVU5Hr1G000950.4	Barley	plastid	22.83	28.19
PGSC0003DMT400029999	Potato	cytosol	16.3	21.53
PGSC0003DMT400074998	Potato	cytosol	13.22	21.1
PGSC0003DMT400008648	Potato	cytosol	6.16	20.36
PGSC0003DMT400079115	Potato	cytosol	21.56	19.6
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	23.19	19.25
PGSC0003DMT400064250	Potato	mitochondrion	17.75	17.82
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	10.87	17.6
PGSC0003DMT400063732	Potato	cytosol	20.29	17.47
PGSC0003DMT400053918	Potato	cytosol	16.85	16.94
PGSC0003DMT400053176	Potato	cytosol	11.96	16.92
PGSC0003DMT400091765	Potato	cytosol	15.76	12.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400042949	EnsemblPlantsGene:PGSC0003DMG400016653	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	PGSC:PGSC0003DMG400016653	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000294CC89	UniProt:M1BDV0	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016653]

Coordinates

chr6:-:33888650..33890994

Molecular Weight (calculated)

59496.6 Da

IEP (calculated)

8.189

GRAVY (calculated)

0.391

Length

552 amino acids

Sequence
(BLAST)

001: MLTQDLTSKS KIDPELIQNS RVGSPIKVRN HPSIEILLDK CLFEVFKRLP SGQKRSVCAC VSKRWLTLLS SIHKDEIAEF NGIEGEGSLL RSLVGREATD
101: VRLAAIAVGI ANRGGLAKLS IRGDNPCRDV TDAGLKAIAR CCPTLRDLSL WNVSFVDSCS KIGNKSPKVV GQYCLNLKLV ILKNCPLIGD KGIEDLFYSA
201: GTVLTEVELQ ALHISDISLK IISHYGTVLT SLVVGELRRI IARDFWVMGI GQCLHKLKAL SISSSNGVND LGLHVICKAC PNLKLFCVRK SVILSDNGLV
301: ACVKASVSLQ NLQLEECHLI TQAGFFGILL NCGKKLKTLS LVKCLGVMDL INVAPSKALC CNSLVSLTIH KCLGVGNATI VVVGSLCHKL THIELSGLLC
401: ITDEGLFPLV NNCAANLVAV NLSGCVNITD KAVSAIVKFN GRSLKSLLVD GCRHDTDATL VKIWNSCWML NVLDVSKCGI TDSEITTLSS AIQLHLQILS
501: LSGCPLVSDN SLPLLLDLVQ NLQGLNIQQC PNISFRTVDA LVEINPGCNI LF

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.