Factsheet for HORVU5Hr1G000950.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G050990.2
HORVU3Hr1G098530.4
HORVU4Hr1G051680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	HORVU4Hr1G051680.1	AT2G27050.1	14675533
AT2G25490.1	HORVU4Hr1G051680.1	AT3G20770.1	14675532
AT2G25490.1	HORVU4Hr1G051680.1	AT3G20770.1	14675533
AT2G25490.1	HORVU3Hr1G050990.2	AT3G28715.1	21798944
AT2G25490.1	HORVU3Hr1G098530.4	AT4G02570.1	14675533
AT5G25350.1	HORVU4Hr1G051680.1	AT3G20770.1	14675532
AT5G25350.1	HORVU4Hr1G051680.1	AT3G20770.1	14675533
AT5G25350.1	HORVU3Hr1G098530.4	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	53.02	89.1
HORVU5Hr1G029670.1	Barley	mitochondrion	77.85	67.84
HORVU7Hr1G090240.1	Barley	cytosol	69.13	57.33
TraesCS7D01G373800.1	Wheat	cytosol	76.29	52.38
TraesCS7B01G278800.1	Wheat	cytosol	75.62	52.24
TraesCS7A01G377500.1	Wheat	cytosol	74.94	51.62
EER90022	Sorghum	cytosol, plastid	60.18	42.97
Os06t0605900-01	Rice	cytosol	57.27	40.83
HORVU6Hr1G038430.3	Barley	plastid	54.59	37.37
Zm00001d036880_P003	Maize	cytosol	58.84	35.73
Zm00001d000408_P001	Maize	cytosol	59.06	35.53
PGSC0003DMT400094835	Potato	cytosol	19.24	35.1
Solyc06g030620.1.1	Tomato	cytosol	14.54	32.34
GSMUA_Achr6P05220_001	Banana	cytosol	43.4	29.66
GSMUA_Achr4P30680_001	Banana	cytosol	42.95	29.45
PGSC0003DMT400007545	Potato	cytosol	41.83	29.36
VIT_11s0016g05410.t01	Wine grape	cytosol	42.73	28.81
KRH03688	Soybean	cytosol	40.94	28.64
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	41.83	28.59
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	42.73	28.59
KRH05167	Soybean	cytosol	38.93	28.52
Solyc12g009560.1.1	Tomato	cytosol	40.49	28.41
CDX76980	Canola	cytosol	37.14	27.71
KRH20255	Soybean	cytosol	39.6	27.7
VIT_04s0008g05470.t01	Wine grape	cytosol	41.16	27.59
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	39.6	27.57
AT2G25490.1	Thale cress	plastid	38.48	27.39
Bra036542.1-P	Field mustard	cytosol	37.58	27.27
KRH15886	Soybean	cytosol	39.15	27.17
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	38.93	27.15
CDY35358	Canola	cytosol	37.36	26.81
CDY19807	Canola	cytosol	36.91	26.79
CDX87090	Canola	cytosol	36.91	26.79
Solyc08g060810.2.1	Tomato	plastid	39.82	26.77
Bra034254.1-P	Field mustard	cytosol	37.14	26.69
KRH52439	Soybean	cytosol, nucleus, peroxisome	37.81	26.49
KRH62989	Soybean	cytosol	38.48	26.46
PGSC0003DMT400040977	Potato	nucleus	39.6	26.46
KRH61771	Soybean	cytosol	37.14	26.1
CDX80503	Canola	cytosol	35.79	25.76
CDX88173	Canola	cytosol	35.79	25.72
AT5G25350.1	Thale cress	cytosol	35.57	25.52
Bra009835.1-P	Field mustard	cytosol	35.35	25.4
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	37.14	24.85
Solyc06g030610.1.1	Tomato	cytosol	14.77	24.09
PGSC0003DMT400042949	Potato	cytosol	28.19	22.83
Solyc06g049010.1.1	Tomato	plastid	30.43	21.94
KRH04870	Soybean	cytosol	11.63	19.12
PGSC0003DMT400089433	Potato	mitochondrion	19.46	18.95
HORVU1Hr1G065030.2	Barley	cytosol	12.53	14.78
HORVU6Hr1G059950.1	Barley	cytosol	12.75	13.67
HORVU3Hr1G091200.4	Barley	cytosol	11.86	12.62
HORVU4Hr1G014630.1	Barley	cytosol	10.74	12.44
HORVU3Hr1G012530.12	Barley	cytosol	9.17	11.68
HORVU0Hr1G005070.1	Barley	plastid	13.42	10.75
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	15.88	10.52
HORVU5Hr1G050420.1	Barley	plastid	12.98	10.51
HORVU5Hr1G024060.1	Barley	cytosol, plastid	19.46	10.32

Protein Annotations

EnsemblPlants:HORVU5Hr1G000950.4	EnsemblPlantsGene:HORVU5Hr1G000950	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	ncoils:Coil
PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000B46576A	UniProt:A0A287Q659	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	:	:

Description

No Description!

Coordinates

chrchr5H:-:3397988..3407395

Molecular Weight (calculated)

45877.3 Da

IEP (calculated)

7.676

GRAVY (calculated)

0.068

Length

447 amino acids

Sequence
(BLAST)

001: VFVCSCRWRS ACPGPGGGGS VRRRATSETR ARHGRAPLRL LRCGGGTPGG AGGQEAEVLR RVQGARAWGA SSCALLGGIR AFEIKRAQAL AVPDLNQVFV
101: CEDEDEAGAE AASVRPGRSE RTLEGEAAKD VALTATDGFR GSLESVXXXX XXXXXXXRRC TWEPPDADSG ISAIAGGCPS LSSLALWDVP LVTDAGLAEI
201: AAGLPSLEKL DITGCPLVTN KGLVAVAQGC PDLKTLTIES CSDVANEGLK AIGRCSKLQA VNIKNCAYVG DQGVSGLICS PTASLAKVCL QGLSITDPSL
301: AVIGYYGKAI TNLTLTRLSS VGERVFWVMA NTLGLQKLRC MSITSCPGVT ELALVSIAKF CPSLKQLYLR KCSQISDDLL KDFREASKVL ENLQIEECNR
401: VTLTGILSFL LNCSPKFKAL SLVKCTGIKD IWGVDRAADD QGCHLDD

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.