CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX82228
CDX85931
CDX87650
CDX90932
CDY06379
CDY13521
CDY18013
CDY19606
CDY21896
CDY22060
CDY27563
CDY32390
CDY39073
CDY60391

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25350.1	CDX68112	AT1G75950.1	14675533
AT5G25350.1	CDX73212	AT1G75950.1	14675533
AT5G25350.1	CDX80590	AT1G75950.1	14675533
AT5G25350.1	CDX85931	AT1G75950.1	14675533
AT5G25350.1	CDX87650	AT1G75950.1	14675533
AT5G25350.1	CDY13521	AT1G75950.1	14675533
AT5G25350.1	CDY39073	AT1G75950.1	14675533
AT5G25350.1	CDX82228	AT3G20770.1	14675532
AT5G25350.1	CDY06379	AT3G20770.1	14675532
AT5G25350.1	CDY19606	AT3G20770.1	14675532
AT5G25350.1	CDY27563	AT3G20770.1	14675532
AT5G25350.1	CDY32390	AT3G20770.1	14675532
AT5G25350.1	CDY60391	AT3G20770.1	14675532
AT5G25350.1	CDX82228	AT3G20770.1	14675533
AT5G25350.1	CDY06379	AT3G20770.1	14675533
AT5G25350.1	CDY19606	AT3G20770.1	14675533
AT5G25350.1	CDY27563	AT3G20770.1	14675533
AT5G25350.1	CDY32390	AT3G20770.1	14675533
AT5G25350.1	CDY60391	AT3G20770.1	14675533
AT5G25350.1	CDX90932	AT4G02570.1	14675533
AT5G25350.1	CDY18013	AT4G02570.1	14675533
AT5G25350.1	CDY21896	AT4G02570.1	14675533
AT5G25350.1	CDY22060	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19807	Canola	cytosol	96.43	96.43
AT5G25350.1	Thale cress	cytosol	85.23	84.27
CDX88173	Canola	cytosol	84.42	83.6
CDX80503	Canola	cytosol	83.77	83.09
CDX76980	Canola	cytosol	56.49	58.1
KRH15886	Soybean	cytosol	59.42	56.83
CDY35358	Canola	cytosol	57.47	56.82
KRH05167	Soybean	cytosol	54.06	54.59
KRH61771	Soybean	cytosol	56.33	54.56
KRH52439	Soybean	cytosol, nucleus, peroxisome	55.68	53.76
VIT_04s0008g05470.t01	Wine grape	cytosol	58.12	53.67
PGSC0003DMT400040977	Potato	nucleus	56.66	52.17
Solyc08g060810.2.1	Tomato	plastid	55.52	51.43
GSMUA_Achr6P05220_001	Banana	cytosol	50.0	47.09
GSMUA_Achr4P30680_001	Banana	cytosol	49.84	47.09
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.81	45.86
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.54	45.72
HORVU7Hr1G090240.1	Barley	cytosol	39.77	45.45
PGSC0003DMT400089433	Potato	mitochondrion	33.77	45.32
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	48.86	45.06
PGSC0003DMT400094835	Potato	cytosol	17.86	44.9
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	47.73	44.89
TraesCS6D01G169200.1	Wheat	cytosol	47.08	44.68
TraesCS6A01G181900.1	Wheat	cytosol	46.75	44.38
Zm00001d053642_P001	Maize	cytosol	46.75	44.24
TraesCS6B01G210700.1	Wheat	cytosol	46.59	44.22
HORVU6Hr1G038430.3	Barley	plastid	46.75	44.1
EER90022	Sorghum	cytosol, plastid	44.81	44.09
Zm00001d015778_P001	Maize	cytosol	45.94	44.01
Os02t0200900-01	Rice	cytosol	46.43	43.33
TraesCS7B01G278800.1	Wheat	cytosol	45.45	43.28
TraesCS7D01G373800.1	Wheat	cytosol	45.45	43.01
PGSC0003DMT400042949	Potato	cytosol	38.47	42.93
Solyc06g049010.1.1	Tomato	plastid	43.18	42.9
TraesCS7A01G377500.1	Wheat	cytosol	45.13	42.84
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	46.43	42.81
Os06t0605900-01	Rice	cytosol	42.69	41.95
Solyc06g030620.1.1	Tomato	cytosol	13.15	40.3
Solyc06g030610.1.1	Tomato	cytosol	17.21	38.69
Zm00001d036880_P003	Maize	cytosol	44.97	37.64
HORVU5Hr1G029670.1	Barley	mitochondrion	31.01	37.23
HORVU5Hr1G000950.4	Barley	plastid	26.79	36.91
Zm00001d000408_P001	Maize	cytosol	44.32	36.74
CDX88014	Canola	cytosol	16.88	25.68
CDX88336	Canola	cytosol	13.47	25.62
CDY58589	Canola	extracellular	5.36	25.19
CDX87549	Canola	cytosol	14.45	25.07
CDY58588	Canola	extracellular	5.36	25.0
CDX68067	Canola	cytosol	14.45	24.79
CDX79184	Canola	cytosol	14.12	24.23
CDX90588	Canola	cytosol	24.68	24.17
CDY46953	Canola	cytosol	16.07	24.09
CDY40798	Canola	cytosol	16.07	24.09
CDY09760	Canola	cytosol	24.51	24.08
CDX96592	Canola	cytosol	13.96	23.76
CDY67973	Canola	plasma membrane	13.8	23.48
CDX71945	Canola	cytosol	13.31	23.23
CDY06032	Canola	cytosol	13.15	22.95
CDY25663	Canola	plastid	18.51	22.18
CDY28039	Canola	cytosol	13.8	21.79
CDY43846	Canola	plastid	18.18	21.79
CDY35942	Canola	cytosol	13.64	21.27
CDX83114	Canola	cytosol	17.05	21.13
CDY19741	Canola	cytosol	20.78	20.75
CDY53337	Canola	cytosol	21.43	20.66
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	22.4	20.41
CDY18646	Canola	cytosol	17.21	20.23
CDX68575	Canola	cytosol	16.72	20.16
CDX80753	Canola	endoplasmic reticulum	22.08	20.12
CDX81326	Canola	cytosol	17.05	20.04
CDX88253	Canola	cytosol	20.62	19.84
CDX80608	Canola	cytosol	20.45	19.69
CDY45764	Canola	cytosol, peroxisome, plastid	16.88	17.84
CDY29091	Canola	plastid	4.06	14.45
CDY12824	Canola	nucleus	17.53	9.91
CDY01426	Canola	cytosol	17.37	9.88

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EnsemblPlants:CDX87090	ProteinID:CDX87090	ProteinID:CDX87090.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00145987001
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEC84A	SEG:seg	:	:

Description

BnaC09g04050D

Coordinates

chrLK031849:+:402961..405604

Molecular Weight (calculated)

65193.8 Da

IEP (calculated)

8.142

GRAVY (calculated)

0.114

Length

616 amino acids

Sequence
(BLAST)

001: MSGIFSFSGD EDFFNGGTMH LSPGSCPGVY LPPRKRLRVA APSPYSAFNQ KQTSIEVLPD ECLFEILRRL PSGKERSACA CVSKHWLNTL TSIKANESVQ
101: EVESEGFLSR SLEGNKATDL RLAAISVGTS ARGGLGKLQI RGSGFESRVT DAGIESIAYG CPSLKALSLW NLPAVSDKGL SEIARCCPML EKLDLSRCPG
201: VTDKGLVAIA ENCRNLNDLT IDSCSGVGNE GLRGIARRCS SLRSISLRSC PRVGDQGVAF LLAQAGSYLT KVKLQMVNVT GLSLAVLGHY GVAVTDLVLS
301: GLQGVNEKGF WVMGNAKGMK KLKSLSVTSC RGMTDVGVEA VGSGCPDLKH VSLNKCLLVS GKGLVSLAKS ALALESLKLE ECHRINHFGF LGFLMSCGSK
401: LKAFSLVNCL GIQDLNSESH LTSTSSLRSL SVRCCPGFGD ASLTFLGKFC HQLQDVELCG LNGVTDAGVL SLLQSNNVGL VKLNLNGCVN VTDNTVSAVS
501: FSHGSTLESL SLDGCKNITD ASLVTVAKNC YSVNDLDVSN TLVSDHGIKA LASSPNHLSL QVLSLGGCSG ITDKSKACIQ KLGRTLLGLN IQRCGRISSS
601: TVDSLLEQLW RCDILY

Best Arabidopsis Sequence Match ( AT5G25350.1 )
(BLAST)

001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY

Arabidopsis Description

EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.