CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016422.1-P	Field mustard	cytosol	97.24	99.72
CDY67973	Canola	plasma membrane	98.34	98.34
AT1G21410.1	Thale cress	cytosol	91.16	91.67
CDX88336	Canola	cytosol	77.62	86.73
CDX87549	Canola	cytosol	83.15	84.79
CDX79184	Canola	cytosol	83.15	83.84
CDX68067	Canola	cytosol	82.6	83.29
CDY58589	Canola	extracellular	27.62	76.34
KRH64574	Soybean	cytosol	66.02	74.45
CDY58588	Canola	extracellular	27.07	74.24
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	69.89	74.19
Solyc04g063380.2.1	Tomato	cytosol	70.44	70.05
KRH15905	Soybean	cytosol	70.44	68.73
KRH53355	Soybean	cytosol	70.44	68.55
KRH18090	Soybean	cytosol	70.44	68.0
GSMUA_Achr10P...	Banana	cytosol	62.98	64.23
Zm00001d038224_P004	Maize	cytosol	65.19	64.13
GSMUA_Achr6P18620_001	Banana	cytosol	63.81	62.94
EES18256	Sorghum	cytosol, nucleus, plastid	63.81	62.6
Os01t0881900-01	Rice	cytosol	65.19	62.27
Os05t0425700-01	Rice	cytosol	64.09	61.7
GSMUA_AchrUn_...	Banana	cytosol	62.43	61.41
TraesCS1D01G265100.1	Wheat	cytosol	62.71	61.35
TraesCS1A01G264900.1	Wheat	cytosol	62.71	61.35
TraesCS3D01G402900.2	Wheat	cytosol	64.36	61.32
VIT_18s0001g15010.t01	Wine grape	mitochondrion	72.38	61.22
HORVU1Hr1G065030.2	Barley	cytosol	64.09	61.21
TraesCS3A01G407700.1	Wheat	cytosol	64.09	61.05
TraesCS3B01G440600.2	Wheat	cytosol	63.81	60.63
TraesCS1B01G275600.1	Wheat	cytosol	63.26	60.42
EES03986	Sorghum	cytosol	63.26	60.1
HORVU3Hr1G091200.4	Barley	cytosol	63.81	55.0
Zm00001d000224_P001	Maize	cytosol	63.54	53.12
CDX88014	Canola	cytosol	21.27	19.01
CDX71945	Canola	cytosol	17.4	17.85
CDY06032	Canola	cytosol	17.4	17.85
CDY40798	Canola	cytosol	20.17	17.76
CDY46953	Canola	cytosol	19.89	17.52
CDX87090	Canola	cytosol	23.76	13.96
CDY19807	Canola	cytosol	23.76	13.96
CDY28039	Canola	cytosol	14.92	13.85
CDY35942	Canola	cytosol	14.92	13.67
CDX88173	Canola	cytosol	23.2	13.5
CDY45764	Canola	cytosol, peroxisome, plastid	21.27	13.21
CDX80503	Canola	cytosol	22.65	13.2
CDX76980	Canola	cytosol	21.82	13.19
CDY35358	Canola	cytosol	22.38	13.0
CDY09760	Canola	cytosol	22.38	12.92
CDX90588	Canola	cytosol	22.38	12.88
CDX80753	Canola	endoplasmic reticulum	24.03	12.87
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	23.76	12.72
CDY19741	Canola	cytosol	20.44	11.99
CDY53337	Canola	cytosol	20.44	11.58
CDY43846	Canola	plastid	16.3	11.48
CDX81326	Canola	cytosol	16.57	11.45
CDX80608	Canola	cytosol	20.17	11.41
CDX88253	Canola	cytosol	20.17	11.41
CDY25663	Canola	plastid	16.02	11.28
CDY18646	Canola	cytosol	16.3	11.26
CDX68575	Canola	cytosol	15.19	10.76
CDX83114	Canola	cytosol	14.64	10.66
CDY29091	Canola	plastid	3.87	8.09
CDY12824	Canola	nucleus	16.57	5.5
CDY01426	Canola	cytosol	16.3	5.45

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlants:CDX96592	ProteinID:CDX96592	ProteinID:CDX96592.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00102790001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44673	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE41CB

Description

BnaA08g21350D

Coordinates

chrLK031895:-:166641..168924

Molecular Weight (calculated)

39821.5 Da

IEP (calculated)

7.292

GRAVY (calculated)

0.060

Length

362 amino acids

Sequence
(BLAST)

001: MVMVVGETSM ELDQCFQMMM MKMEGVSIKE WKDIPVELLM RILSLVDDRN VIAASGVCCG WRDAISLGLT RLRLSWCNNN MNSLVLSLAP KFVKLQTLIL
101: RQDKPQLEDN AVEAIANHCH ELQELDLSKS LKLTDRSLYA LAHGCPNLTK LNLSGCTSFS DKAIAYLTRS CRNLKVLNLC GCVNAVSDYT LEAIGNNCNQ
201: MQSLNLGWCE KISDDGVMSL AYGCPDLRTL DLCGCVLITD ESVVALADWC VHLRSLGLYY CRNITDRAMY SLAQSGVKNK PGGQWKSSAK KSKFDEEGLR
301: SLNISQCTAL TPSAVQAVCD TFPALHTCSG RHSLVMSGCL NLTSVHCACI LQAHRSVPHS AH

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.