CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18090	Soybean	cytosol	94.88	93.87
KRH64574	Soybean	cytosol	75.74	87.54
KRH53355	Soybean	cytosol	86.52	86.29
CDX88336	Canola	cytosol	66.31	75.93
CDX87549	Canola	cytosol	71.16	74.37
Bra015699.1-P	Field mustard	cytosol	70.89	74.29
CDX79184	Canola	cytosol	70.89	73.26
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	66.85	72.73
Bra003692.1-P	Field mustard	cytosol	70.35	72.7
AT1G77000.1	Thale cress	cytosol	70.35	72.5
AT1G21410.1	Thale cress	cytosol	70.35	72.5
CDX68067	Canola	cytosol	69.54	71.87
Bra016422.1-P	Field mustard	cytosol	68.19	71.67
CDX96592	Canola	cytosol	68.73	70.44
Solyc04g063380.2.1	Tomato	cytosol	68.73	70.05
CDY67973	Canola	plasma membrane	68.19	69.89
CDY58589	Canola	extracellular	23.72	67.18
CDY58588	Canola	extracellular	23.18	65.15
GSMUA_Achr10P...	Banana	cytosol	62.26	65.07
GSMUA_AchrUn_...	Banana	cytosol	63.07	63.59
GSMUA_Achr6P18620_001	Banana	cytosol	62.8	63.49
Zm00001d038224_P004	Maize	cytosol	61.73	62.23
VIT_18s0001g15010.t01	Wine grape	mitochondrion	71.7	62.15
EES18256	Sorghum	cytosol, nucleus, plastid	61.46	61.79
TraesCS1A01G264900.1	Wheat	cytosol	61.46	61.62
Os05t0425700-01	Rice	cytosol	61.99	61.17
TraesCS1D01G265100.1	Wheat	cytosol	60.92	61.08
TraesCS1B01G275600.1	Wheat	cytosol	61.99	60.69
HORVU1Hr1G065030.2	Barley	cytosol	61.99	60.69
Os01t0881900-01	Rice	cytosol	61.73	60.42
TraesCS3D01G402900.2	Wheat	cytosol	61.73	60.26
TraesCS3A01G407700.1	Wheat	cytosol	61.73	60.26
TraesCS3B01G440600.2	Wheat	cytosol	61.46	59.84
EES03986	Sorghum	cytosol	60.38	58.79
HORVU3Hr1G091200.4	Barley	cytosol	60.65	53.57
Zm00001d000224_P001	Maize	cytosol	60.65	51.96
KRG90608	Soybean	cytosol	21.83	19.38
KRH36149	Soybean	cytosol	21.56	19.09
KRH50979	Soybean	cytosol	17.25	18.23
KRH16153	Soybean	cytosol	11.32	16.94
KRH38032	Soybean	cytosol	15.9	15.61
KRH11333	Soybean	cytosol	16.44	15.6
KRH02152	Soybean	cytosol	24.53	15.58
KRH52037	Soybean	cytosol	16.71	15.35
KRH05167	Soybean	cytosol	23.99	14.59
KRH72766	Soybean	cytosol	21.02	14.5
KRH20947	Soybean	cytosol, nucleus, peroxisome	23.72	14.5
KRH52439	Soybean	cytosol, nucleus, peroxisome	24.26	14.11
KRH61771	Soybean	cytosol	23.99	13.99
KRH15886	Soybean	cytosol	24.26	13.98
KRG96764	Soybean	cytosol	23.72	13.73
KRH47976	Soybean	cytosol	14.29	13.66
KRH68483	Soybean	cytosol	23.45	13.57
KRH03688	Soybean	cytosol	23.18	13.46
KRH76059	Soybean	cytosol, nucleus, peroxisome	24.26	13.41
KRH65525	Soybean	cytosol, peroxisome, plastid	25.34	13.28
KRH20255	Soybean	cytosol	22.64	13.15
KRH17127	Soybean	cytosol	21.83	12.42
KRH62989	Soybean	cytosol	21.29	12.15
KRH04530	Soybean	cytosol	17.52	12.06
KRH77049	Soybean	cytosol	16.71	11.88
KRH28425	Soybean	cytosol	16.71	11.79
KRH15408	Soybean	plastid	16.98	11.48
KRH57971	Soybean	cytosol	17.25	11.45
KRH05631	Soybean	plastid	17.25	11.37
KRH04870	Soybean	cytosol	8.09	11.03
KRH61346	Soybean	cytosol	15.36	8.17

Protein Annotations

EntrezGene:100793275	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EMBL:ACUP02008717	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_14G118200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MAC7	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	ProteinID:KRH15901.1	ProteinID:KRH15902.1	ProteinID:KRH15903.1	ProteinID:KRH15904.1
EnsemblPlants:KRH15905	ProteinID:KRH15905	ProteinID:KRH15905.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000233AB50	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:15781469..15786117

Molecular Weight (calculated)

40354.1 Da

IEP (calculated)

7.428

GRAVY (calculated)

0.175

Length

371 amino acids

Sequence
(BLAST)

001: MVGKESLRTE VLNLSFEKLM MVECGGNSGK GVNIKAGVIT EWKDIPVELL MQILSLVDDQ TVIIASEVCR GWREAICFGL TRLSLSWCSK NMNNLVLSLS
101: PKFTKLQTLI LRQDKPQLED NAVETIANFC HDLQILDLSK SFKLTDRSLY AVALGCRDLT KLNISGCSAF SDNALAYLAS FCRKLKVLNL CGCVKAASDT
201: ALQAIGHYCN QLQFLNLGWC ENVSDVGVMS LAYGCPDLRT LDLCGCVLIT DDSVIVLANR CPHLRSLGLY YCQSITDKAM YSLAQSKLNN RMWGSVKGGG
301: NDDDGLRTLN ISQCTALTPS AVQAVCDSCP SLHTCSGRHS LIMSGCLNLT SVHCVCAGQA HRAITLPHAA H

Best Arabidopsis Sequence Match ( AT1G77000.3 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITGKTE KPEPEFLCHL LNISCCYR

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.