CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61346	Soybean	cytosol	72.03	41.69
KRH15408	Soybean	plastid	48.51	35.7
KRH05631	Soybean	plastid	48.51	34.81
GSMUA_Achr8P15580_001	Banana	cytosol	34.41	34.07
GSMUA_Achr9P11380_001	Banana	cytosol	37.13	33.48
KRH28425	Soybean	cytosol	43.56	33.46
KRH77049	Soybean	cytosol	43.07	33.33
GSMUA_Achr3P28280_001	Banana	plastid	39.6	32.45
KRH04530	Soybean	cytosol	42.08	31.54
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	33.91	31.07
Os04t0505700-01	Rice	cytosol, mitochondrion	31.44	30.6
GSMUA_Achr2P05250_001	Banana	cytosol	36.63	30.45
KRH57971	Soybean	cytosol	41.83	30.23
GSMUA_Achr4P12920_001	Banana	plastid	37.87	29.94
OQU89081	Sorghum	cytosol	38.37	29.52
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	38.12	29.22
TraesCS5B01G158800.1	Wheat	plastid	38.12	29.22
TraesCS5A01G161400.1	Wheat	cytosol, plastid	38.12	29.22
Zm00001d019677_P001	Maize	cytosol	37.38	28.76
TraesCS2A01G359900.1	Wheat	cytosol	38.37	28.65
KXG26667	Sorghum	plastid	33.17	28.63
Zm00001d003103_P001	Maize	plastid	36.63	28.46
Zm00001d025808_P001	Maize	plastid	37.87	28.02
Zm00001d025812_P001	Maize	plastid	37.62	27.84
HORVU0Hr1G005070.1	Barley	plastid	38.37	27.78
HORVU5Hr1G050420.1	Barley	plastid	37.87	27.72
GSMUA_Achr9P22570_001	Banana	plastid	29.95	27.5
GSMUA_Achr9P18840_001	Banana	plastid	38.37	21.23
KRH16153	Soybean	cytosol	12.38	20.16
KRH47976	Soybean	cytosol	18.32	19.07
KRH36149	Soybean	cytosol	19.55	18.85
KRG90608	Soybean	cytosol	19.31	18.66
KRH64574	Soybean	cytosol	14.36	18.07
KRH38032	Soybean	cytosol	16.83	17.99
KRH18090	Soybean	cytosol	15.84	17.07
KRH53355	Soybean	cytosol	15.59	16.94
KRH15905	Soybean	cytosol	15.35	16.71
KRH11333	Soybean	cytosol	15.1	15.6
KRH05167	Soybean	cytosol	23.27	15.41
KRH20255	Soybean	cytosol	23.76	15.02
KRH02152	Soybean	cytosol	21.53	14.9
KRH03688	Soybean	cytosol	23.51	14.87
KRH62989	Soybean	cytosol	23.51	14.62
KRH15886	Soybean	cytosol	23.02	14.44
Zm00001d037295_P001	Maize	mitochondrion	8.66	14.34
KRH20947	Soybean	cytosol, nucleus, peroxisome	21.04	14.0
KRH52439	Soybean	cytosol, nucleus, peroxisome	21.78	13.79
KRH61771	Soybean	cytosol	21.53	13.68
KRH50979	Soybean	cytosol	11.63	13.39
KRH04870	Soybean	cytosol	8.42	12.5
KRG96764	Soybean	cytosol	19.55	12.32
KRH72766	Soybean	cytosol	16.34	12.27
KRH68483	Soybean	cytosol	19.31	12.17
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.68	12.16
KRH76059	Soybean	cytosol, nucleus, peroxisome	19.8	11.92
KRH65525	Soybean	cytosol, peroxisome, plastid	19.8	11.3
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	6.44	11.16
KRH17127	Soybean	cytosol	17.33	10.74

Protein Annotations

EntrezGene:100791336	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02003403	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_06G042800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K822	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH52037	ProteinID:KRH52037	ProteinID:KRH52037.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44356
PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002339BD0	:

Description

hypothetical protein

Coordinates

chr6:-:3246839..3248053

Molecular Weight (calculated)

44989.0 Da

IEP (calculated)

8.230

GRAVY (calculated)

0.089

Length

404 amino acids

Sequence
(BLAST)

001: MGGVAAVTID DIPDNCLACI FQLFPPADQK KLSLVCRRWL KVEGHTHHRL CLTLPYSSVL ASIFSRFDSV TDLTLQCPNL MSMCDGNLVV ISDLCPNLIR
101: LQITKCSYLS YAGLEVLARS CERLKSFSCT SCTFGPNSID ALIHHCTTLE QLSIEYSTVT THGAQFLNFY PLIRAKNLTT VKIVQCSVEE YWDMFFHSLA
201: SQVTSLLEVH LDGCGVSDNG LRAISKLPNL ETLHLVKTHK CTHAGLVAVA EGCNKSLRKL CINVSDWKGT NKIGDKGLIA FAKCCSNLQE LVLIGMNPSK
301: ASLKILASNC QSLEHLGLWG SNKFGDTEIC CIAGKCVALK ELHIERCPRV YDRDIKTLAA KCPNLVRVKV FECKWVTERD EYVRYHRRLV HVTCKPRTAC
401: RSPL

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.