Factsheet for TraesCS2D01G358900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0505700-01	Rice	cytosol, mitochondrion	82.31	87.47
TraesCS2A01G359900.1	Wheat	cytosol	98.41	80.22
KXG26667	Sorghum	plastid	84.81	79.91
HORVU0Hr1G005070.1	Barley	plastid	97.51	77.06
Zm00001d003103_P001	Maize	plastid	84.35	71.54
Zm00001d025808_P001	Maize	plastid	82.31	66.48
Zm00001d025812_P001	Maize	plastid	82.09	66.3
GSMUA_Achr9P11380_001	Banana	cytosol	50.79	50.0
PGSC0003DMT400008648	Potato	cytosol	18.82	49.7
GSMUA_Achr8P15580_001	Banana	cytosol	45.58	49.26
Solyc04g078490.1.1	Tomato	cytosol	50.11	41.39
VIT_18s0001g09940.t01	Wine grape	plastid	48.75	39.74
CDY43846	Canola	plastid	45.12	38.72
Bra032213.1-P	Field mustard	plastid	45.12	38.72
CDX81326	Canola	cytosol	45.58	38.36
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.8	38.33
CDY25663	Canola	plastid	44.67	38.33
KRH15408	Soybean	plastid	47.62	38.25
AT1G47056.1	Thale cress	cytosol, plastid	44.9	38.22
KRH28425	Soybean	cytosol	45.35	38.02
CDY18646	Canola	cytosol	44.67	37.6
KRH77049	Soybean	cytosol	44.44	37.55
Bra037120.1-P	Field mustard	cytosol	44.67	37.45
CDX83114	Canola	cytosol	42.18	37.42
AT5G67250.1	Thale cress	cytosol	44.67	37.38
VIT_07s0129g01110.t01	Wine grape	plastid	47.62	37.3
CDX68575	Canola	cytosol	43.08	37.18
Bra029994.1-P	Field mustard	cytosol	43.08	37.18
KRH05631	Soybean	plastid	46.94	36.77
PGSC0003DMT400053918	Potato	cytosol	45.35	36.43
Solyc03g044220.1.1	Tomato	cytosol	45.12	36.25
AT3G50080.1	Thale cress	cytosol	42.86	36.21
Solyc02g092990.1.1	Tomato	plastid	45.12	36.18
KRH04530	Soybean	cytosol	44.22	36.18
PGSC0003DMT400064250	Potato	mitochondrion	44.9	36.0
AT4G07400.1	Thale cress	nucleus	44.9	35.74
KRH57971	Soybean	cytosol	45.12	35.6
KRH52037	Soybean	cytosol	31.07	33.91
PGSC0003DMT400091765	Potato	cytosol	49.21	30.74
CDY01426	Canola	cytosol	45.35	18.47
CDY12824	Canola	nucleus	45.58	18.44
KRH61346	Soybean	cytosol	26.76	16.91
TraesCS6D01G216400.1	Wheat	cytosol	15.65	16.55
TraesCS3D01G402900.2	Wheat	cytosol	13.83	16.05
TraesCS3D01G067600.2	Wheat	cytosol	12.47	15.71
TraesCS1D01G265100.1	Wheat	cytosol	13.15	15.68
TraesCS6D01G169200.1	Wheat	cytosol	22.45	15.25
TraesCS7D01G373800.1	Wheat	cytosol	22.22	15.05
TraesCS4D01G083300.1	Wheat	cytosol	12.93	14.77
TraesCS4D01G148000.1	Wheat	cytosol	19.95	14.08
TraesCS5D01G155900.1	Wheat	mitochondrion	20.86	13.28
TraesCS5D01G103900.3	Wheat	cytosol	18.59	12.31

Protein Annotations

EnsemblPlants:TraesCS2D01G358900.1	EnsemblPlantsGene:TraesCS2D01G358900	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chr2D:-:460777443..460779031

Molecular Weight (calculated)

46661.3 Da

IEP (calculated)

8.496

GRAVY (calculated)

0.204

Length

441 amino acids

Sequence
(BLAST)

001: MLGYNTPAIF SRFTAVTKLA LRCARGSGAD SLNDGGAAAV AATLPSDRLA RLKLRGLRQL SDAGLASLAA AAPVLRKLSV ASCTFGPKAF VAVVQSCPLL
101: EDLSVKRLRG LPDTSGAITA TAITEDILFP LAMSLRSVCL KDLYSALCFV PLVSSSPNLR SLKILRCSGG WDLPLEVIAA RAPGLVEIHL EKLQVGDRGL
201: SAVSACANLE VLFLVKTPEC TDGGIISVAQ NCHKLRKLHI DGWRTNRIGD CGLMAVARGC PDLQELVLIG VNPTVQSLRM LGEHCRALER LALCGCETVG
301: DTEIICLAER CAALKKLCIK GCPVTDRGMG ALNGGCPSLV KVKLKRCRGV SYECVEHLKM ARGDSFSISL DIVLEHDAVA PSENGVQETG QQAQVTELTG
401: QMAAMDLPTN AAGAQSFAQA NSRMRSVMSA LRRRFGNPPP A

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.