CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0505700-01	Rice	cytosol, mitochondrion	76.71	86.51
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	79.91	84.81
Zm00001d003103_P001	Maize	plastid	91.03	81.92
Zm00001d025808_P001	Maize	plastid	91.03	78.02
Zm00001d025812_P001	Maize	plastid	90.81	77.84
TraesCS2A01G359900.1	Wheat	cytosol	81.62	70.61
HORVU0Hr1G005070.1	Barley	plastid	82.27	69.0
GSMUA_Achr9P11380_001	Banana	cytosol	48.29	50.45
GSMUA_Achr8P15580_001	Banana	cytosol	43.59	50.0
PGSC0003DMT400008648	Potato	cytosol	16.88	47.31
Solyc04g078490.1.1	Tomato	cytosol	48.72	42.7
OQU89081	Sorghum	cytosol	47.44	42.29
VIT_18s0001g09940.t01	Wine grape	plastid	48.29	41.77
KRH15408	Soybean	plastid	47.44	40.44
KRH28425	Soybean	cytosol	45.3	40.3
Bra032213.1-P	Field mustard	plastid	44.23	40.27
CDY43846	Canola	plastid	44.23	40.27
CDY25663	Canola	plastid	43.8	39.88
KRH77049	Soybean	cytosol	44.23	39.66
AT1G47056.1	Thale cress	cytosol, plastid	43.8	39.58
KRH05631	Soybean	plastid	46.79	38.9
CDX81326	Canola	cytosol	43.16	38.55
CDX83114	Canola	cytosol	40.81	38.43
VIT_07s0129g01110.t01	Wine grape	plastid	45.73	38.01
Solyc02g092990.1.1	Tomato	plastid	44.66	38.0
CDX68575	Canola	cytosol	41.45	37.96
KRH04530	Soybean	cytosol	43.59	37.85
CDY18646	Canola	cytosol	42.31	37.79
Bra029994.1-P	Field mustard	cytosol	41.24	37.77
AT5G67250.1	Thale cress	cytosol	42.52	37.76
AT4G07400.1	Thale cress	nucleus	44.66	37.73
Bra037120.1-P	Field mustard	cytosol	42.31	37.64
PGSC0003DMT400064250	Potato	mitochondrion	44.23	37.64
PGSC0003DMT400053918	Potato	cytosol	44.02	37.52
KRH57971	Soybean	cytosol	44.66	37.39
AT3G50080.1	Thale cress	cytosol	41.45	37.16
Solyc03g044220.1.1	Tomato	cytosol	43.38	36.98
KRH52037	Soybean	cytosol	28.63	33.17
PGSC0003DMT400091765	Potato	cytosol	47.01	31.16
CDY01426	Canola	cytosol	44.23	19.11
CDY12824	Canola	nucleus	44.02	18.9
KRH61346	Soybean	cytosol	25.43	17.05
EES04933	Sorghum	cytosol	12.61	16.91
EES03986	Sorghum	cytosol	13.25	16.27
EES18256	Sorghum	cytosol, nucleus, plastid	12.82	16.26
KXG30697	Sorghum	cytosol	14.53	16.11
EES08900	Sorghum	cytosol	20.94	15.43
EER90022	Sorghum	cytosol, plastid	19.87	14.86
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	20.51	14.66
KXG22793	Sorghum	nucleus	21.37	14.37
EES09509	Sorghum	cytosol	11.54	13.99
EES07863	Sorghum	nucleus	20.09	13.6
KXG23663	Sorghum	cytosol	17.95	12.69
KXG29052	Sorghum	plastid	16.45	11.67

Protein Annotations

EnsemblPlants:KXG26667	EnsemblPlantsGene:SORBI_3006G139700	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	ProteinID:KXG26667	ProteinID:KXG26667.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0001C804D1	UniProt:A0A1B6PLW8	MapMan:19.2.2.8.1.4.6	:	:

Description

hypothetical protein

Coordinates

chr6:-:50192618..50196073

Molecular Weight (calculated)

49572.4 Da

IEP (calculated)

8.837

GRAVY (calculated)

0.095

Length

468 amino acids

Sequence
(BLAST)

001: MGHSPSSLSK SGTSSSPPRR SRSLSLDARA ALGNAAPALF ARFTAVTKLA LRCARGSGAD SLSDYGAAAV ADALPSERLS RLKLRGLRQL SDAGLASLAA
101: AAPAIRKLSV ASCTFGPKAF VAVLQSCPLL EDLSVKRLRG LPDTAGATNS IAEDIKFPPA LSLRSVCLKD LYSALCFVPL VASSPNLRSL KILRCSGAWD
201: LPLEVITARA PGLVELHLEK LQVGDRGLAA LSACPNLEVL FLVKTPECTD SGIISVAEKC HKLRKLHVDG WRTNRIGDFG LMAVARGCPD LQELVLIGVN
301: PTVLSLRMFG EHCRSLERLA LCGCETVGDA EIICLAERWA ALKKLCIKGC PVSDRGMVAL NGGCPSLVKV KLKRCRGVSY ECIENLKVTR GESFSISLDI
401: VLEHEAGSAS ENGVQENGQA QVAELTDQMA GMDLPANAAG AQSSTHTINR MRSVMSAIRR RFGNPPPP

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.