Factsheet for VIT_07s0129g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67250.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662
AT5G67250.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09940.t01	Wine grape	plastid	58.79	61.18
Solyc02g092990.1.1	Tomato	plastid	57.37	58.73
PGSC0003DMT400064250	Potato	mitochondrion	57.37	58.73
Solyc03g044220.1.1	Tomato	cytosol	56.31	57.74
PGSC0003DMT400053918	Potato	cytosol	56.31	57.74
AT5G67250.1	Thale cress	cytosol	53.46	57.12
KRH77049	Soybean	cytosol	52.75	56.9
CDY18646	Canola	cytosol	52.75	56.68
CDX81326	Canola	cytosol	52.75	56.68
KRH28425	Soybean	cytosol	52.93	56.65
CDX83114	Canola	cytosol	49.91	56.54
Bra037120.1-P	Field mustard	cytosol	52.58	56.27
Bra029994.1-P	Field mustard	cytosol	50.98	56.16
AT3G50080.1	Thale cress	cytosol	52.04	56.13
CDX68575	Canola	cytosol	49.91	54.99
GSMUA_Achr3P28280_001	Banana	plastid	47.96	54.77
KRH04530	Soybean	cytosol	50.44	52.69
KRH57971	Soybean	cytosol	51.69	52.06
GSMUA_Achr8P15580_001	Banana	cytosol	36.59	50.49
GSMUA_Achr9P11380_001	Banana	cytosol	39.43	49.55
GSMUA_Achr2P05250_001	Banana	cytosol	42.63	49.38
GSMUA_Achr9P22570_001	Banana	plastid	38.54	49.32
OQU89081	Sorghum	cytosol	45.65	48.95
GSMUA_Achr4P12920_001	Banana	plastid	44.23	48.73
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.47	48.58
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.47	48.58
TraesCS5B01G158800.1	Wheat	plastid	45.29	48.39
Zm00001d019677_P001	Maize	cytosol	44.94	48.19
Os04t0505700-01	Rice	cytosol, mitochondrion	35.35	47.95
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	37.3	47.62
HORVU5Hr1G050420.1	Barley	plastid	45.47	46.38
Zm00001d003103_P001	Maize	plastid	42.45	45.96
KXG26667	Sorghum	plastid	38.01	45.73
Zm00001d025812_P001	Maize	plastid	42.27	43.59
Zm00001d025808_P001	Maize	plastid	42.27	43.59
TraesCS2A01G359900.1	Wheat	cytosol	41.74	43.44
HORVU0Hr1G005070.1	Barley	plastid	41.39	41.76
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	36.06	37.73
GSMUA_Achr9P18840_001	Banana	plastid	46.36	35.75
CDY01426	Canola	cytosol	53.29	27.7
CDY12824	Canola	nucleus	53.29	27.52
VIT_10s0071g00310.t01	Wine grape	cytosol	15.81	21.55
VIT_05s0020g02400.t01	Wine grape	cytosol	22.2	20.46
VIT_04s0008g05470.t01	Wine grape	cytosol	22.2	18.74
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	20.96	18.35
VIT_08s0007g07030.t01	Wine grape	cytosol	11.37	18.29
VIT_11s0016g05410.t01	Wine grape	cytosol	20.96	17.8
VIT_08s0058g00700.t01	Wine grape	cytosol	20.6	17.5
VIT_06s0004g07520.t01	Wine grape	cytosol	20.43	17.37
VIT_18s0001g15010.t01	Wine grape	mitochondrion	12.43	16.36
Zm00001d037295_P001	Maize	mitochondrion	5.33	12.3
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	4.62	11.71
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	4.44	10.73

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100250708	wikigene:100250708	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:AM454724
ProteinID:CAN59800	ProteinID:CAN59800.1	ProteinID:CCB57802	ProteinID:CCB57802.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6HSZ2	EMBL:FN596246	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100250708	wikigene:LOC100250708	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44356
PANTHER:PTHR44356:SF3	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC56070
UniParc:UPI00015CA19A	ArrayExpress:VIT_07s0129g01110	EnsemblPlantsGene:VIT_07s0129g01110	EnsemblPlants:VIT_07s0129g01110.t01	unigene:Vvi.4843	RefSeq:XP_002283593
RefSeq:XP_002283593.1	RefSeq:XP_010652772.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:16265333..16267378

Molecular Weight (calculated)

60292.0 Da

IEP (calculated)

8.182

GRAVY (calculated)

-0.010

Length

563 amino acids

Sequence
(BLAST)

001: MGQSHSSSSA GAAPAPPAIP MGPVVPTSLL APAMSSAPGM YLRESNSSLR STARSPLYIS MPETDDCVES SEVDGPDYTS DLPDDILACI FQFLSTGDRK
101: RCSLVCQRWL LVEGRSRHRL SLNAQSEIIP LIPCIFFRFD SVSKLTLKCD RRSISISDDA LILISNLSKN LTRLKLRGCR ELTDVGMAAL AKNCKGLKKL
201: SCGSCTFGTK GINAVLDHCS ALEELSVKRL RGMNDRGVAE PIGPGVAASS LKSLCLKELY NGQCFERLVV ASKKLRTLKL FGCFGDWDRF LETVTDGNSN
301: LVEIHLERLQ VTDMGLSAIS KCLNLEILHI LRTPECTNLG LVSVAGNCKL LRKLHIDGWR TNRIGDEGLI AVAKQCTNLQ ELVLIGVNPT SSSITAVASN
401: CQKLERLALC GSQTIGDKEI SSIAAKCTAL RKLCIKGCPI SDHGMEALAW GCPNLVKVKV KKCPGVTCEA VDSLRARREA LIVNLDAVAV ETLDASTSDG
501: GAQEDGQEPP PMVSQVTVVD GPSGSNGLSA LFKSKFGHFA GRNLVACAFG RWSNSRGSSA DGK

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.