Factsheet for Solyc02g092990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064250	Potato	mitochondrion	96.18	96.18
Solyc03g044220.1.1	Tomato	cytosol	73.45	73.59
Solyc04g078490.1.1	Tomato	cytosol	58.73	60.49
VIT_07s0129g01110.t01	Wine grape	plastid	58.73	57.37
CDX83114	Canola	cytosol	51.27	56.74
Bra029994.1-P	Field mustard	cytosol	52.55	56.56
AT5G67250.1	Thale cress	cytosol	54.18	56.55
CDX68575	Canola	cytosol	52.18	56.16
CDY18646	Canola	cytosol	53.27	55.92
CDX81326	Canola	cytosol	53.27	55.92
KRH77049	Soybean	cytosol	52.73	55.56
Bra037120.1-P	Field mustard	cytosol	53.09	55.51
KRH28425	Soybean	cytosol	52.36	54.75
GSMUA_Achr3P28280_001	Banana	plastid	48.73	54.36
AT3G50080.1	Thale cress	cytosol	51.27	54.02
KRH04530	Soybean	cytosol	51.27	52.32
GSMUA_Achr2P05250_001	Banana	cytosol	45.45	51.44
GSMUA_Achr8P15580_001	Banana	cytosol	37.45	50.49
KRH57971	Soybean	cytosol	51.27	50.45
GSMUA_Achr9P22570_001	Banana	plastid	40.0	50.0
GSMUA_Achr9P11380_001	Banana	cytosol	40.73	50.0
GSMUA_Achr4P12920_001	Banana	plastid	46.18	49.71
TraesCS5B01G158800.1	Wheat	plastid	46.0	48.01
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.82	47.82
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.64	47.63
Zm00001d019677_P001	Maize	cytosol	44.55	46.67
OQU89081	Sorghum	cytosol	44.55	46.67
HORVU5Hr1G050420.1	Barley	plastid	45.45	45.29
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.18	45.12
Os04t0505700-01	Rice	cytosol, mitochondrion	34.0	45.06
KXG26667	Sorghum	plastid	38.0	44.66
Zm00001d003103_P001	Maize	plastid	42.18	44.62
Zm00001d025812_P001	Maize	plastid	42.36	42.67
Zm00001d025808_P001	Maize	plastid	42.18	42.49
TraesCS2A01G359900.1	Wheat	cytosol	41.09	41.77
HORVU0Hr1G005070.1	Barley	plastid	41.09	40.5
GSMUA_Achr9P18840_001	Banana	plastid	47.09	35.48
CDY01426	Canola	cytosol	54.55	27.7
CDY12824	Canola	nucleus	54.55	27.52
Solyc04g008980.2.1	Tomato	cytosol	16.18	21.19
Solyc04g063380.2.1	Tomato	cytosol	13.09	19.78
Solyc06g007680.1.1	Tomato	cytosol	14.36	19.75
Solyc12g009560.1.1	Tomato	cytosol	21.82	18.84
Solyc06g005380.2.1	Tomato	cytosol	11.82	18.79
Solyc08g060810.2.1	Tomato	plastid	22.36	18.5
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	21.45	18.41
Solyc06g054440.2.1	Tomato	mitochondrion	17.27	17.76
Solyc06g049010.1.1	Tomato	plastid	19.82	17.58
Solyc01g099970.2.1	Tomato	extracellular	19.09	16.96
Solyc10g076290.1.1	Tomato	cytosol	20.18	16.44
Solyc06g030610.1.1	Tomato	cytosol	8.18	16.42
Solyc06g030620.1.1	Tomato	cytosol	5.45	14.93
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.0	14.86
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.82	13.73
Zm00001d037295_P001	Maize	mitochondrion	5.64	12.7

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4BD95
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR44356
PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g092990.1	EnsemblPlants:Solyc02g092990.1.1
UniParc:UPI0002768303	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:53953768..53955420

Molecular Weight (calculated)

59746.9 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.158

Length

550 amino acids

Sequence
(BLAST)

001: MGQYSSTHCG GGTKHRHRSL HPTQLPNYNR SASDNSQSDF FSLMNSDEDE SPIPFVFGNR DYTDDLPDEC LALIFQCLSS GDRKKCSLVS RRWLLVEGQS
101: RHRLALNAKV EILPHVPTIF SRFDSVTKLA LRCDRKSVSI NDEALNLISL RCSKLIRLKL RGCRDVTDVG MSAFARNCKN LKKFSCGSCM FGAKGMNALL
201: DNCSSLEELS VKRLRGMNDG FAADPIGPGA AASSLKSICL KELYNGQCFA PLIAGSKNLK TLKLLRCLGD WDRLFETIGS RENHVSEIHL ERLQVGDTGL
301: AAISNCPKLE ILHLVKTPEC TDAGVVTVAS KCKLLRKLHI DGWRTNRIGD EGLVAIAENS SNLKELVLIG LNPTSTSLFA IASNCKKLER LALCGSDTIG
401: DPEVTCIATK CMALKKLCIK GCEVTDQGIE SFAWGCPNLV KIKVKKCKHV TGDVADRIRA MRQSLAVNLD GGEIDIEPVD SSASDGGAIE EATEFQHTAA
501: ALPIIGASDI PSTSNVGRSS ASKPWFGFFG GRGLVACTLR RWSNGNGESL

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.