Factsheet for Solyc12g009560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007545	Potato	cytosol	97.17	97.17
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	75.98	75.51
VIT_11s0016g05410.t01	Wine grape	cytosol	72.68	69.83
KRH03688	Soybean	cytosol	67.19	66.98
KRH20255	Soybean	cytosol	67.19	66.98
KRH62989	Soybean	cytosol	66.09	64.77
KRH04870	Soybean	cytosol	24.18	56.62
Solyc08g060810.2.1	Tomato	plastid	59.03	56.54
GSMUA_Achr4P30680_001	Banana	cytosol	54.16	52.91
GSMUA_Achr6P05220_001	Banana	cytosol	54.0	52.6
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	53.22	51.83
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	21.51	51.5
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	52.75	50.3
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	52.59	50.15
Zm00001d053642_P001	Maize	cytosol	51.02	49.92
Zm00001d015778_P001	Maize	cytosol	50.39	49.92
HORVU7Hr1G090240.1	Barley	cytosol	42.23	49.91
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	50.71	49.31
TraesCS7B01G278800.1	Wheat	cytosol	48.82	48.07
TraesCS7A01G377500.1	Wheat	cytosol	48.82	47.92
TraesCS7D01G373800.1	Wheat	cytosol	48.67	47.62
TraesCS6D01G169200.1	Wheat	cytosol	48.35	47.46
TraesCS6B01G210700.1	Wheat	cytosol	48.19	47.3
TraesCS6A01G181900.1	Wheat	cytosol	48.19	47.3
Os02t0200900-01	Rice	cytosol	48.98	47.27
EER90022	Sorghum	cytosol, plastid	46.31	47.12
HORVU6Hr1G038430.3	Barley	plastid	48.19	47.01
Solyc06g049010.1.1	Tomato	plastid	45.68	46.94
Os06t0605900-01	Rice	cytosol	45.68	46.41
Solyc06g030610.1.1	Tomato	cytosol	19.31	44.89
HORVU5Hr1G029670.1	Barley	mitochondrion	34.38	42.69
Solyc06g030620.1.1	Tomato	cytosol	13.19	41.79
HORVU5Hr1G000950.4	Barley	plastid	28.41	40.49
Zm00001d036880_P003	Maize	cytosol	46.78	40.49
Zm00001d000408_P001	Maize	cytosol	46.31	39.7
Solyc06g005380.2.1	Tomato	cytosol	13.03	23.99
Solyc04g063380.2.1	Tomato	cytosol	13.66	23.9
Solyc04g008980.2.1	Tomato	cytosol	15.54	23.57
Solyc04g078490.1.1	Tomato	cytosol	19.62	23.41
Solyc06g054440.2.1	Tomato	mitochondrion	19.31	22.99
Solyc01g099970.2.1	Tomato	extracellular	22.29	22.94
Solyc10g076290.1.1	Tomato	cytosol	24.02	22.67
Solyc06g007680.1.1	Tomato	cytosol	13.97	22.25
Solyc02g092990.1.1	Tomato	plastid	18.84	21.82
Solyc03g044220.1.1	Tomato	cytosol	18.52	21.49

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EMBL:DQ235695	EMBL:DQ307488	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:GQ144956	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	UniProt:Q2PQJ1	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc12g009560.1	EnsemblPlants:Solyc12g009560.1.1	UniParc:UPI000067C46F	SEG:seg

Description

EIN3-binding F-box protein 1 [Source:UniProtKB/TrEMBL;Acc:Q2PQJ1]

Coordinates

chr12:+:2815885..2818657

Molecular Weight (calculated)

67689.6 Da

IEP (calculated)

7.172

GRAVY (calculated)

0.219

Length

637 amino acids

Sequence
(BLAST)

001: MPTLVNYSGD DEFYSGGSFC SADLGLMLSL GHADVYCPPR KRARISGPFV VEDRSKDPSL EVLPDECLFE ILRRLPGGRE RGAAACVSKR WLTVLSSVKN
101: SEICRSKSYN NLNDAIMISK DEDLEVECDG YLTRCVEGKK ATDIRLAAIA VGTSTRGGLG KLSIRGSNSV RGITNVGLSA VAHGCPSLRV LSLWNVPSIG
201: DEGLLEVARE CHSLEKLDLS HCRSISNKGL VAIAENCPSL TSLTIESCPN IGNEGLQAVG KYCTKLQSLT IKDCPLVGDQ GVASLLSSGA SMLTKVKLHG
301: LNITDFSLAV IGHYGKLITS LNLCSLRNVS QKGFWVMGNA QGLQSLVSLT ITLCQGATDV GLEAVGKGCP NLKYMCIRKC CFVSDGGLVA FAKEAGSLES
401: LILEECNRIT QVGILNAVSN CRKLKSLSLV KCMGIKDLAL QTSMLSPCES LRSLSIRSCP GFGSSSLAMV GKLCPKLHQL DLSGLCGITD AGLLPLLENC
501: EGLVKVNLSD CLNLTDQVVL SLAMRHGETL ELLNLDGCRK VTDASLVAIA DYCPLLIDLD VSKSAITDSG VAALSRGVQV NLQVLSLSGC SMVSNKSVLS
601: LKKLGENLLG LNLQHCSVSC SSVELLVEAL WRCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.