Factsheet for GSMUA_Achr9P28510_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11740_001
GSMUA_Achr2P11540_001
GSMUA_Achr3P09440_001
GSMUA_Achr5P27670_001
GSMUA_Achr6P15930_001
GSMUA_Achr6P35890_001
GSMUA_Achr8P21550_001
GSMUA_Achr9P17080_001
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	GSMUA_Achr10P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr1P11740_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr6P35890_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05220_001	Banana	cytosol	79.66	79.66
GSMUA_Achr4P30680_001	Banana	cytosol	78.29	78.53
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	73.7	72.16
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	73.39	71.86
VIT_11s0016g05410.t01	Wine grape	cytosol	55.96	55.2
PGSC0003DMT400007545	Potato	cytosol	52.75	54.16
Zm00001d015778_P001	Maize	cytosol	53.06	53.97
HORVU7Hr1G090240.1	Barley	cytosol	44.34	53.8
KRH03688	Soybean	cytosol	52.29	53.52
Zm00001d053642_P001	Maize	cytosol	53.21	53.46
KRH20255	Soybean	cytosol	52.14	53.36
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	53.36	53.28
Solyc12g009560.1.1	Tomato	cytosol	51.83	53.22
VIT_04s0008g05470.t01	Wine grape	cytosol	53.98	52.92
KRH15886	Soybean	cytosol	51.99	52.8
PGSC0003DMT400040977	Potato	nucleus	53.67	52.47
KRH62989	Soybean	cytosol	51.99	52.31
KRH61771	Soybean	cytosol	50.76	52.2
Solyc08g060810.2.1	Tomato	plastid	53.06	52.18
KRH05167	Soybean	cytosol	48.62	52.13
KRH52439	Soybean	cytosol, nucleus, peroxisome	50.76	52.04
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	50.92	51.95
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	21.1	51.88
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	50.92	51.87
TraesCS6A01G181900.1	Wheat	cytosol	51.38	51.77
TraesCS6B01G210700.1	Wheat	cytosol	51.22	51.62
TraesCS6D01G169200.1	Wheat	cytosol	51.07	51.46
TraesCS7B01G278800.1	Wheat	cytosol	50.46	51.0
HORVU6Hr1G038430.3	Barley	plastid	50.76	50.84
EER90022	Sorghum	cytosol, plastid	48.47	50.64
AT2G25490.1	Thale cress	plastid	48.62	50.64
TraesCS7A01G377500.1	Wheat	cytosol	50.15	50.54
TraesCS7D01G373800.1	Wheat	cytosol	50.31	50.54
Os02t0200900-01	Rice	cytosol	50.61	50.15
Os06t0605900-01	Rice	cytosol	47.71	49.76
AT5G25350.1	Thale cress	cytosol	46.94	49.28
CDX76980	Canola	cytosol	44.5	48.58
Bra034254.1-P	Field mustard	cytosol	46.18	48.55
CDX87090	Canola	cytosol	45.72	48.54
Bra036542.1-P	Field mustard	cytosol	45.57	48.38
CDX88173	Canola	cytosol	45.87	48.23
CDY35358	Canola	cytosol	45.87	48.15
PGSC0003DMT400089433	Potato	mitochondrion	33.79	48.15
Bra009835.1-P	Field mustard	cytosol	45.72	48.07
CDX80503	Canola	cytosol	45.57	47.99
CDY19807	Canola	cytosol	45.11	47.89
PGSC0003DMT400094835	Potato	cytosol	17.74	47.35
PGSC0003DMT400042949	Potato	cytosol	38.23	45.29
KRH04870	Soybean	cytosol	18.65	44.85
Solyc06g049010.1.1	Tomato	plastid	42.35	44.68
HORVU5Hr1G029670.1	Barley	mitochondrion	33.95	43.27
Solyc06g030610.1.1	Tomato	cytosol	17.74	42.34
Zm00001d036880_P003	Maize	cytosol	47.55	42.26
HORVU5Hr1G000950.4	Barley	plastid	28.59	41.83
Zm00001d000408_P001	Maize	cytosol	47.4	41.72
Solyc06g030620.1.1	Tomato	cytosol	12.39	40.3
GSMUA_Achr8P13910_001	Banana	mitochondrion	14.53	26.84
GSMUA_Achr5P19410_001	Banana	cytosol	16.97	26.12
GSMUA_Achr2P17760_001	Banana	cytosol	13.76	25.42
GSMUA_Achr8P15580_001	Banana	cytosol	15.29	24.51
GSMUA_AchrUn_...	Banana	cytosol	13.61	24.18
GSMUA_Achr10P...	Banana	cytosol	13.0	23.94
GSMUA_Achr6P18620_001	Banana	cytosol	13.3	23.71
GSMUA_Achr9P11380_001	Banana	cytosol	16.21	23.66
GSMUA_Achr3P28280_001	Banana	plastid	16.67	22.11
GSMUA_Achr8P28940_001	Banana	cytosol	12.84	22.11
GSMUA_Achr3P22880_001	Banana	cytosol	21.25	21.72
GSMUA_Achr2P05250_001	Banana	cytosol	15.6	20.99
GSMUA_Achr7P22290_001	Banana	cytosol	22.32	20.39
GSMUA_Achr6P20450_001	Banana	cytosol	20.49	20.3
GSMUA_Achr9P22570_001	Banana	plastid	13.61	20.23
GSMUA_Achr11P...	Banana	cytosol	20.18	20.12
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	21.41	19.61
GSMUA_Achr4P12920_001	Banana	plastid	15.29	19.57
GSMUA_Achr9P18840_001	Banana	plastid	14.98	13.42

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G28510_001	EnsemblPlants:GSMUA_Achr9P28510_001	EnsemblPlants:GSMUA_Achr9T28510_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0U4A8
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002955401	SEG:seg	:	:

Description

Putative EIN3-binding F-box protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28510_001]

Coordinates

chr9:-:32470030..32473432

Molecular Weight (calculated)

70233.5 Da

IEP (calculated)

6.073

GRAVY (calculated)

0.197

Length

654 amino acids

Sequence
(BLAST)

001: MAALVKYGGN DDICPGPFYS NLTDSSLLLS LGQKADVYGP PCKRYRVTAP LIFRAGEKVI DEEKQPRSID TLPDECLFEI LRRLPGDKER SNSACVSKHW
101: LMLVSSIRSS ELAACNKACD ESVKNPSLFL NNDVIVDEQE SENNGYLTRC LDAEEATDIR LASIALGTCS RGGLGKLSIR GSNSTRVTDV GLSAIARGCP
201: SLRVLSMWKV PFVTDVGLSE IANGCPLLEK LDLCQCPLIS DKGLIAVAQK CPDLTSLSIK SCSRIGNEGL QAIGRCCPKL KSVTINDCLQ VGDKGIASLV
301: SSASSSLERI RLRTLNISDI ALAVIGHYGK NVIDLSLTEL QDVNEKGFWV MGNTHGLQKL KSISINCCNG LTDTALQAIA KGSPFLKQLF VCKSCYLSDA
401: GLIAFAGTAK ALEGLHLEDC NHITLMGILG ALLKRSAELK SLSLVRCLGL KDISFEFSQL PSCMSLRSLT IQDCPGVTSA SIQVVGRICP QLQNIDLSGQ
501: VGVTDESLIP LIESSEVGFV EINLTGCVNV TDDLVTMLIK VHGSSLKMLN LHGCRKITDR SLLAITESCS VLDDLDLSSC SVSDYGVALL ASARQLNLHI
601: LSLASCSQVT LKSLPFLGNL GLSIVGLNLQ DCSLISAHGL RLLEEKLWWC DIIS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.