Factsheet for GSMUA_Achr5P19410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P13910_001	Banana	mitochondrion	69.41	83.33
Zm00001d051219_P001	Maize	cytosol	63.29	64.51
TraesCS6D01G216400.1	Wheat	cytosol	63.29	64.51
TraesCS6B01G262900.1	Wheat	cytosol	63.29	64.51
TraesCS6A01G234100.2	Wheat	cytosol	62.82	64.03
HORVU6Hr1G059950.1	Barley	cytosol	62.35	63.55
KXG30697	Sorghum	cytosol	61.88	62.32
VIT_10s0071g00310.t01	Wine grape	cytosol	60.47	62.23
Os02t0636400-01	Rice	cytosol	29.18	62.0
AT5G23340.1	Thale cress	cytosol	58.12	60.99
Bra009671.1-P	Field mustard	cytosol	57.88	60.74
CDX88014	Canola	cytosol	57.65	60.49
Bra029367.1-P	Field mustard	cytosol	57.41	59.37
KRG90608	Soybean	cytosol	58.35	59.33
CDY40798	Canola	cytosol	57.18	59.12
Solyc04g008980.2.1	Tomato	cytosol	58.35	59.05
CDY46953	Canola	cytosol	56.94	58.88
PGSC0003DMT400029999	Potato	cytosol	57.88	58.85
KRH36149	Soybean	cytosol	57.88	58.71
CDY45764	Canola	cytosol, peroxisome, plastid	58.12	42.37
KRH16153	Soybean	cytosol	24.71	42.34
CDY29091	Canola	plastid	16.0	39.31
GSMUA_Achr10P...	Banana	cytosol	19.06	22.82
GSMUA_AchrUn_...	Banana	cytosol	19.29	22.28
GSMUA_Achr6P18620_001	Banana	cytosol	18.82	21.8
GSMUA_Achr8P28940_001	Banana	cytosol	18.82	21.05
GSMUA_Achr2P17760_001	Banana	cytosol	16.24	19.49
GSMUA_Achr3P22880_001	Banana	cytosol	28.47	18.91
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	26.12	16.97
GSMUA_Achr6P20450_001	Banana	cytosol	26.12	16.82
GSMUA_Achr9P11380_001	Banana	cytosol	17.41	16.52
GSMUA_Achr8P15580_001	Banana	cytosol	15.76	16.42
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	27.53	16.39
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	25.65	16.32
GSMUA_Achr6P05220_001	Banana	cytosol	24.94	16.21
GSMUA_Achr4P30680_001	Banana	cytosol	24.47	15.95
GSMUA_Achr11P...	Banana	cytosol	24.0	15.55
GSMUA_Achr3P28280_001	Banana	plastid	17.88	15.42
GSMUA_Achr7P22290_001	Banana	cytosol	25.65	15.22
GSMUA_Achr2P05250_001	Banana	cytosol	17.18	15.02
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	23.06	14.67
GSMUA_Achr4P12920_001	Banana	plastid	17.41	14.48
GSMUA_Achr9P22570_001	Banana	plastid	14.12	13.64
GSMUA_Achr9P18840_001	Banana	plastid	17.88	10.41

Protein Annotations

EnsemblPlants:GSMUA_Achr5P19410_001	EnsemblPlants:GSMUA_Achr5T19410_001	EnsemblPlantsGene:GSMUA_Achr5G19410_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_4
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45191	PFAM:PF12799	PFAM:PF13516	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000294B131	UniProt:M0SZX0	MapMan:35.1	:	:

Description

Putative F-box/LRR-repeat protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G19410_001]

Coordinates

chr5:+:21055723..21061026

Molecular Weight (calculated)

46120.7 Da

IEP (calculated)

5.521

GRAVY (calculated)

0.054

Length

425 amino acids

Sequence
(BLAST)

001: MAPARLNGGD RPTEEGASIC INDALTDDEL RAVFAWLEKE DERDLFGLVC KRWLRLQSSE RRRLRARAGP AMLRRMTDRF PGLLELDLSQ SASRSFYPGV
101: TDSDLAVIAA GFWNLRVLDL QNCKGVTDVG MISLGNDLPS LQSLDVSQCR KITDKGLVAV ALGCSSLKRL HVAGSKSVTD ELLKALSRSC SGLEDLGLAG
201: CNNITDTGLS ALADGCRYIN SLDISKCTKI GDIGVSRIAE VASSSLKILK LLDCFRVGDE SIFSLAHFCH NLETLVIGGC RDVTDESIKA LSLACCDSLR
301: SLRMDWCLNI TDSSLNSVLS NCGHLAALDI GCCDKLTDLA FQSVGMGGFE SQLKVLKMSN CMKITVSGVG SMLKFCKSLE YVDLRSCPHI TRLGCQQAGL
401: QFPECCKTNY DGSLSENETI VDVFF

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.