Factsheet for GSMUA_Achr8P13910_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P19410_001	Banana	cytosol	83.33	69.41
Os02t0636400-01	Rice	cytosol	32.49	57.5
Zm00001d051219_P001	Maize	cytosol	63.28	53.72
TraesCS6D01G216400.1	Wheat	cytosol	62.71	53.24
TraesCS6B01G262900.1	Wheat	cytosol	62.43	53.0
TraesCS6A01G234100.2	Wheat	cytosol	61.86	52.52
HORVU6Hr1G059950.1	Barley	cytosol	61.3	52.04
KXG30697	Sorghum	cytosol	61.86	51.9
AT5G23340.1	Thale cress	cytosol	59.32	51.85
VIT_10s0071g00310.t01	Wine grape	cytosol	60.45	51.82
Bra009671.1-P	Field mustard	cytosol	58.76	51.36
CDX88014	Canola	cytosol	58.47	51.11
CDY40798	Canola	cytosol	58.47	50.37
Bra029367.1-P	Field mustard	cytosol	58.19	50.12
CDY46953	Canola	cytosol	57.63	49.63
KRG90608	Soybean	cytosol	58.47	49.52
Solyc04g008980.2.1	Tomato	cytosol	58.19	49.05
PGSC0003DMT400029999	Potato	cytosol	57.63	48.8
KRH36149	Soybean	cytosol	57.63	48.69
CDY45764	Canola	cytosol, peroxisome, plastid	58.47	35.51
CDY29091	Canola	plastid	16.67	34.1
KRH16153	Soybean	cytosol	22.32	31.85
GSMUA_Achr10P...	Banana	cytosol	19.49	19.44
GSMUA_Achr6P18620_001	Banana	cytosol	19.77	19.07
GSMUA_AchrUn_...	Banana	cytosol	18.64	17.93
GSMUA_Achr2P17760_001	Banana	cytosol	16.38	16.38
GSMUA_Achr8P28940_001	Banana	cytosol	16.95	15.79
GSMUA_Achr3P22880_001	Banana	cytosol	26.84	14.84
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	26.84	14.53
GSMUA_Achr6P20450_001	Banana	cytosol	26.55	14.24
GSMUA_Achr6P05220_001	Banana	cytosol	25.99	14.07
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	25.71	13.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	27.4	13.59
GSMUA_Achr11P...	Banana	cytosol	25.14	13.57
GSMUA_Achr4P30680_001	Banana	cytosol	24.86	13.5
GSMUA_Achr7P22290_001	Banana	cytosol	25.99	12.85
GSMUA_Achr9P11380_001	Banana	cytosol	15.25	12.05
GSMUA_Achr8P15580_001	Banana	cytosol	13.84	12.01
GSMUA_Achr3P28280_001	Banana	plastid	16.38	11.76
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	22.03	11.68
GSMUA_Achr4P12920_001	Banana	plastid	15.25	10.57
GSMUA_Achr9P22570_001	Banana	plastid	12.71	10.23
GSMUA_Achr2P05250_001	Banana	cytosol	13.56	9.88
GSMUA_Achr9P18840_001	Banana	plastid	15.82	7.67

Protein Annotations

EnsemblPlants:GSMUA_Achr8P13910_001	EnsemblPlants:GSMUA_Achr8T13910_001	EnsemblPlantsGene:GSMUA_Achr8G13910_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR45191	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000294B923
UniProt:M0TQ94	MapMan:35.1	:	:	:	:

Description

Putative F-box/LRR-repeat protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13910_001]

Coordinates

chr8:-:10620956..10623090

Molecular Weight (calculated)

38392.7 Da

IEP (calculated)

7.230

GRAVY (calculated)

0.151

Length

354 amino acids

Sequence
(BLAST)

001: MLRRMADRFP GLVELDLSQS ASRSFYPGVT DSDLAVIAAG FRNLRVLDLQ NCKGVTDVGM TTLGNGLPSL QSLDVSQCKK VTDKGLVAVA SGCSYLKRLH
101: VTGSKSITDE LLKSLSKSCP CLEDLGLAGC NNITDIGLST LADGCRHIKS LDVSKCTKIS DVGVSRVAEV APSSLKVLKM LDCFRVGDKS IFSLAHFCHN
201: LETVVVGGCR DVSDESIKSL SLVCCHSLRS FRMDWCLNIT DSSLKCMLSN CRHLVALDIG CCDKITDSAF HSLEMGGFES QLKVLKMSNC LKITISGVGS
301: ILQFCKYLEY LDLRSCPHIT RLGCQQAGLQ FPECCRTNFD GSLGESEGMV DFFL

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.