Factsheet for GSMUA_Achr10P10550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038224_P004	Maize	cytosol	73.24	70.65
EES18256	Sorghum	cytosol, nucleus, plastid	72.39	69.65
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	66.48	69.21
Os05t0425700-01	Rice	cytosol	72.68	68.62
KRH64574	Soybean	cytosol	61.69	68.22
Os01t0881900-01	Rice	cytosol	72.68	68.07
TraesCS3A01G407700.1	Wheat	cytosol	72.68	67.89
TraesCS1D01G265100.1	Wheat	cytosol	70.7	67.84
TraesCS3D01G402900.2	Wheat	cytosol	72.39	67.63
TraesCS1A01G264900.1	Wheat	cytosol	70.42	67.57
CDX88336	Canola	cytosol	61.41	67.28
TraesCS3B01G440600.2	Wheat	cytosol	72.11	67.19
GSMUA_AchrUn_...	Banana	cytosol	69.3	66.85
HORVU1Hr1G065030.2	Barley	cytosol	70.99	66.49
EES03986	Sorghum	cytosol	71.27	66.4
TraesCS1B01G275600.1	Wheat	cytosol	70.7	66.23
GSMUA_Achr6P18620_001	Banana	cytosol	67.89	65.67
Bra016422.1-P	Field mustard	cytosol	64.51	64.87
Solyc04g063380.2.1	Tomato	cytosol	66.2	64.56
Bra015699.1-P	Field mustard	cytosol	63.38	63.56
CDX87549	Canola	cytosol	63.38	63.38
AT1G21410.1	Thale cress	cytosol	64.23	63.33
CDY67973	Canola	plasma membrane	64.51	63.26
CDX96592	Canola	cytosol	64.23	62.98
KRH15905	Soybean	cytosol	65.07	62.26
CDX79184	Canola	cytosol	62.82	62.12
KRH18090	Soybean	cytosol	65.07	61.6
Bra003692.1-P	Field mustard	cytosol	62.25	61.56
KRH53355	Soybean	cytosol	64.51	61.56
CDX68067	Canola	cytosol	61.97	61.28
CDY58589	Canola	extracellular	22.25	60.31
HORVU3Hr1G091200.4	Barley	cytosol	71.27	60.24
AT1G77000.1	Thale cress	cytosol	60.85	60.0
CDY58588	Canola	extracellular	21.69	58.33
Zm00001d000224_P001	Maize	cytosol	70.14	57.51
VIT_18s0001g15010.t01	Wine grape	mitochondrion	68.17	56.54
GSMUA_Achr8P13910_001	Banana	mitochondrion	19.44	19.49
GSMUA_Achr5P19410_001	Banana	cytosol	22.82	19.06
GSMUA_Achr2P17760_001	Banana	cytosol	17.75	17.8
GSMUA_Achr8P28940_001	Banana	cytosol	18.87	17.63
GSMUA_Achr3P22880_001	Banana	cytosol	25.35	14.06
GSMUA_Achr8P15580_001	Banana	cytosol	16.06	13.97
GSMUA_Achr6P20450_001	Banana	cytosol	24.79	13.33
GSMUA_Achr11P...	Banana	cytosol	24.23	13.11
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	23.94	13.0
GSMUA_Achr3P28280_001	Banana	plastid	17.75	12.78
GSMUA_Achr4P30680_001	Banana	cytosol	23.1	12.58
GSMUA_Achr6P05220_001	Banana	cytosol	23.1	12.54
GSMUA_Achr9P11380_001	Banana	cytosol	15.77	12.5
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	23.1	12.28
GSMUA_Achr2P05250_001	Banana	cytosol	16.34	11.93
GSMUA_Achr7P22290_001	Banana	cytosol	23.66	11.73
GSMUA_Achr4P12920_001	Banana	plastid	16.62	11.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	23.1	11.48
GSMUA_Achr9P22570_001	Banana	plastid	14.08	11.36
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	20.28	10.78
GSMUA_Achr9P18840_001	Banana	plastid	18.03	8.77

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G10550_001	EnsemblPlants:GSMUA_Achr10P10550_001	EnsemblPlants:GSMUA_Achr10T10550_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0RH31
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002958A16	:	:	:	:	:

Description

F-box protein SKP2A [Source:GMGC_GENE;Acc:GSMUA_Achr10G10550_001]

Coordinates

chr10:+:20158467..20162981

Molecular Weight (calculated)

38407.3 Da

IEP (calculated)

7.248

GRAVY (calculated)

0.109

Length

355 amino acids

Sequence
(BLAST)

001: MVSGSGEKME VEPELVMCWK DLPMELLLRI LSLVDDRMVI VSSTVCTGWR DAIGFGLTSL SLSWCKNNMN NLVRSLAPKF TKLQVLTLRQ NNAPQLEDSA
101: VEAVANYCHD LRELDLSKSL RLTDQSLYAL GHGCPRLNKL NISGCSAFTD SALAYLASCC RNLKTLNLCG CARAATDRAL QAVSRHCSEL QSLNLGWCES
201: VSDKGVTSLA AGCPNLRALD LCGCVLITDE SVIAIANCCP HLRSLDLYYC QNITDRAMYS LANSCMKSRY GLWRDDAGSS NGNDNTGLVN LNISQCTALT
301: AAAVQAVCDT FPLLHTCPGR HSLIISGCLS LTSVRCACAI HAHRAGRASL ADHAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.