Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88336 | Canola | cytosol | 82.78 | 91.98 |
| CDX87549 | Canola | cytosol | 89.72 | 90.99 |
| CDX79184 | Canola | cytosol | 90.56 | 90.81 |
| CDX68067 | Canola | cytosol | 90.56 | 90.81 |
| Bra003692.1-P | Field mustard | cytosol | 90.56 | 90.81 |
| Bra015699.1-P | Field mustard | cytosol | 89.17 | 90.68 |
| AT1G21410.1 | Thale cress | cytosol | 83.06 | 83.06 |
| KRH64574 | Soybean | cytosol | 67.5 | 75.7 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 68.06 | 71.85 |
| KRH15905 | Soybean | cytosol | 72.5 | 70.35 |
| KRH53355 | Soybean | cytosol | 72.22 | 69.89 |
| KRH18090 | Soybean | cytosol | 72.78 | 69.87 |
| Solyc04g063380.2.1 | Tomato | cytosol | 68.89 | 68.13 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 74.44 | 62.62 |
| Zm00001d038224_P004 | Maize | cytosol | 62.78 | 61.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.5 | 61.14 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 62.22 | 61.04 |
| GSMUA_Achr10P... | Banana | cytosol | 60.0 | 60.85 |
| EES18256 | Sorghum | cytosol, nucleus, plastid | 61.94 | 60.43 |
| Os05t0425700-01 | Rice | cytosol | 62.22 | 59.57 |
| TraesCS1A01G264900.1 | Wheat | cytosol | 60.56 | 58.92 |
| HORVU1Hr1G065030.2 | Barley | cytosol | 61.94 | 58.84 |
| TraesCS1D01G265100.1 | Wheat | cytosol | 60.28 | 58.65 |
| Os01t0881900-01 | Rice | cytosol | 61.67 | 58.58 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 60.83 | 57.78 |
| TraesCS3D01G402900.2 | Wheat | cytosol | 60.83 | 57.63 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 60.83 | 57.63 |
| EES03986 | Sorghum | cytosol | 60.56 | 57.22 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 60.56 | 57.22 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 60.56 | 51.9 |
| Zm00001d000224_P001 | Maize | cytosol | 61.11 | 50.81 |
| AT5G23340.1 | Thale cress | cytosol | 20.83 | 18.52 |
| AT3G58530.1 | Thale cress | cytosol | 16.94 | 17.28 |
| AT5G01720.1 | Thale cress | vacuole | 25.28 | 13.68 |
| AT5G25350.1 | Thale cress | cytosol | 23.61 | 13.64 |
| AT2G25490.1 | Thale cress | plastid | 23.61 | 13.54 |
| AT3G07550.2 | Thale cress | cytosol | 14.72 | 13.42 |
| AT4G15475.1 | Thale cress | cytosol | 20.83 | 12.3 |
| AT5G67250.1 | Thale cress | cytosol | 17.5 | 11.95 |
| AT3G50080.1 | Thale cress | cytosol | 16.94 | 11.69 |
| AT5G27920.1 | Thale cress | cytosol, extracellular, peroxisome | 20.83 | 11.68 |
| AT1G47056.1 | Thale cress | cytosol, plastid | 15.56 | 10.81 |
| AT4G07400.1 | Thale cress | nucleus | 16.39 | 10.65 |
Protein Annotations
| MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | EntrezGene:844036 | UniProt:A0A178WNL6 | ProteinID:AAC00619.1 | ProteinID:AEE35923.1 |
| ProteinID:AEE35924.1 | EMBL:AK117866 | EMBL:AK175607 | EMBL:AK175925 | ArrayExpress:AT1G77000 | EnsemblPlantsGene:AT1G77000 |
| RefSeq:AT1G77000 | TAIR:AT1G77000 | RefSeq:AT1G77000-TAIR-G | EnsemblPlants:AT1G77000.1 | TAIR:AT1G77000.1 | Symbol:ATSKP2;2 |
| EMBL:AY087441 | Unigene:At.28008 | EMBL:BT024747 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0019538 |
| GO:GO:0051603 | GO:GO:1901332 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_001185415.1 | RefSeq:NP_565147.1 | UniProt:O49286 | ProteinID:OAP18682.1 |
| PFAM:PF00646 | PFAM:PF13516 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020121 | PO:PO:0020137 | PO:PO:0020144 | PO:PO:0020147 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF1 | Symbol:SKP2B | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI00000A86C9 | : | : | : | : |
Description
SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
Coordinates
chr1:+:28940486..28942639
Molecular Weight (calculated)
39911.5 Da
IEP (calculated)
7.500
GRAVY (calculated)
0.012
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.