Factsheet for TraesCS1B01G275600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G264900.1	Wheat	cytosol	96.31	98.65
TraesCS1D01G265100.1	Wheat	cytosol	95.78	98.11
HORVU1Hr1G065030.2	Barley	cytosol	95.78	95.78
Os05t0425700-01	Rice	cytosol	81.79	82.45
EES18256	Sorghum	cytosol, nucleus, plastid	80.21	82.38
Zm00001d038224_P004	Maize	cytosol	79.95	82.34
TraesCS3B01G440600.2	Wheat	cytosol	76.25	75.85
GSMUA_Achr10P...	Banana	cytosol	66.23	70.7
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	62.27	69.21
GSMUA_Achr6P18620_001	Banana	cytosol	65.17	67.3
KRH64574	Soybean	cytosol	56.46	66.67
GSMUA_AchrUn_...	Banana	cytosol	63.85	65.76
Solyc04g063380.2.1	Tomato	cytosol	63.06	65.66
CDX88336	Canola	cytosol	55.41	64.81
AT1G21410.1	Thale cress	cytosol	61.48	64.72
Bra016422.1-P	Field mustard	cytosol	60.16	64.59
CDX87549	Canola	cytosol	59.37	63.38
Bra015699.1-P	Field mustard	cytosol	59.1	63.28
CDX96592	Canola	cytosol	60.42	63.26
CDY67973	Canola	plasma membrane	60.16	62.98
KRH53355	Soybean	cytosol	61.48	62.63
CDX79184	Canola	cytosol	58.84	62.12
KRH15905	Soybean	cytosol	60.69	61.99
Bra003692.1-P	Field mustard	cytosol	58.58	61.84
KRH18090	Soybean	cytosol	60.95	61.6
CDX68067	Canola	cytosol	58.31	61.56
CDY58589	Canola	extracellular	21.11	61.07
AT1G77000.1	Thale cress	cytosol	57.78	60.83
CDY58588	Canola	extracellular	20.58	59.09
VIT_18s0001g15010.t01	Wine grape	mitochondrion	65.44	57.94
TraesCS6B01G262900.1	Wheat	cytosol	20.32	18.47
TraesCS3B01G080300.1	Wheat	cytosol	15.04	16.24
TraesCS4B01G085300.2	Wheat	plastid	15.3	14.32
TraesCS5B01G158800.1	Wheat	plastid	18.73	13.47
TraesCS5B01G097800.2	Wheat	cytosol	21.9	12.56
TraesCS7B01G278800.1	Wheat	cytosol	20.84	12.21
TraesCS6B01G210700.1	Wheat	cytosol	20.05	11.71
TraesCS5B01G149400.1	Wheat	mitochondrion	20.58	11.44

Protein Annotations

EnsemblPlants:TraesCS1B01G275600.1	EnsemblPlantsGene:TraesCS1B01G275600	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44673
PANTHER:PTHR44673:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.1

Description

No Description!

Coordinates

chr1B:+:483289005..483293220

Molecular Weight (calculated)

40670.7 Da

IEP (calculated)

7.257

GRAVY (calculated)

0.026

Length

379 amino acids

Sequence
(BLAST)

001: MVSARSVDRQ LDTCFSNLMV SSGGGRGQAE TGGAMPMLSG WKDLPMELLM RIISVAGDDR IVVVASGVCT GWHDALGWGV TNLSLSWCQQ NMNNLTISFA
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPQLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQSLNLGWC DNVTDEGVTS LASGCPDLRA LDLCGCVLIT DESVIALASG CPYLRSLGLY YCQNITDRAM YSLANSCVKS KRGRWGTPRS
301: SSSNSKDVDG LANLNISQCT ALTPPAVQAV CDSFPSLHTC PERHSLIISG CLSLTNVHCA CGLQRHRAGS ALQATSHAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.