Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58589 | Canola | extracellular | 94.7 | 95.42 |
| CDX88336 | Canola | cytosol | 69.7 | 28.4 |
| CDX96592 | Canola | cytosol | 74.24 | 27.07 |
| CDY67973 | Canola | plasma membrane | 73.48 | 26.8 |
| AT1G21410.1 | Thale cress | cytosol | 72.73 | 26.67 |
| KRH64574 | Soybean | cytosol | 64.39 | 26.48 |
| CDX87549 | Canola | cytosol | 69.7 | 25.92 |
| CDX79184 | Canola | cytosol | 68.94 | 25.35 |
| CDX68067 | Canola | cytosol | 68.18 | 25.07 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 61.36 | 23.75 |
| KRH18090 | Soybean | cytosol | 65.91 | 23.2 |
| KRH15905 | Soybean | cytosol | 65.15 | 23.18 |
| KRH53355 | Soybean | cytosol | 63.64 | 22.58 |
| Solyc04g063380.2.1 | Tomato | cytosol | 60.61 | 21.98 |
| GSMUA_Achr10P... | Banana | cytosol | 58.33 | 21.69 |
| Zm00001d038224_P004 | Maize | cytosol | 59.85 | 21.47 |
| EES18256 | Sorghum | cytosol, nucleus, plastid | 58.33 | 20.87 |
| Os01t0881900-01 | Rice | cytosol | 59.85 | 20.84 |
| TraesCS1A01G264900.1 | Wheat | cytosol | 58.33 | 20.81 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 59.09 | 20.58 |
| HORVU1Hr1G065030.2 | Barley | cytosol | 59.09 | 20.58 |
| TraesCS1D01G265100.1 | Wheat | cytosol | 57.58 | 20.54 |
| Os05t0425700-01 | Rice | cytosol | 58.33 | 20.48 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 58.33 | 20.26 |
| TraesCS3D01G402900.2 | Wheat | cytosol | 58.33 | 20.26 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 58.33 | 20.21 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 56.06 | 20.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.06 | 20.11 |
| EES03986 | Sorghum | cytosol | 57.58 | 19.95 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 62.12 | 19.16 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 58.33 | 18.33 |
| Zm00001d000224_P001 | Maize | cytosol | 59.09 | 18.01 |
| CDY40798 | Canola | cytosol | 22.73 | 7.3 |
| CDX88014 | Canola | cytosol | 21.97 | 7.16 |
| CDY46953 | Canola | cytosol | 21.97 | 7.06 |
| CDY06032 | Canola | cytosol | 17.42 | 6.52 |
| CDX71945 | Canola | cytosol | 17.42 | 6.52 |
| CDY28039 | Canola | cytosol | 15.91 | 5.38 |
| CDX87090 | Canola | cytosol | 25.0 | 5.36 |
| CDY19807 | Canola | cytosol | 24.24 | 5.19 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 22.73 | 5.15 |
| CDY35942 | Canola | cytosol | 15.15 | 5.06 |
| CDY19741 | Canola | cytosol | 22.73 | 4.86 |
| CDX80503 | Canola | cytosol | 22.73 | 4.83 |
| CDX88173 | Canola | cytosol | 22.73 | 4.82 |
| CDY53337 | Canola | cytosol | 22.73 | 4.69 |
| CDY35358 | Canola | cytosol | 21.97 | 4.65 |
| CDX76980 | Canola | cytosol | 19.7 | 4.34 |
| CDX83114 | Canola | cytosol | 15.91 | 4.23 |
| CDX80608 | Canola | cytosol | 20.45 | 4.22 |
| CDX88253 | Canola | cytosol | 20.45 | 4.22 |
| CDX80753 | Canola | endoplasmic reticulum | 21.21 | 4.14 |
| CDX68575 | Canola | cytosol | 15.91 | 4.11 |
| CDX81326 | Canola | cytosol | 15.91 | 4.01 |
| CDY18646 | Canola | cytosol | 15.91 | 4.01 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 20.45 | 3.99 |
| CDY09760 | Canola | cytosol | 18.94 | 3.99 |
| CDX90588 | Canola | cytosol | 18.94 | 3.97 |
| CDY43846 | Canola | plastid | 14.39 | 3.7 |
| CDY25663 | Canola | plastid | 14.39 | 3.7 |
| CDY29091 | Canola | plastid | 3.03 | 2.31 |
| CDY01426 | Canola | cytosol | 15.91 | 1.94 |
| CDY12824 | Canola | nucleus | 15.91 | 1.93 |
Protein Annotations
| EnsemblPlants:CDY58588 | EnsemblPlantsGene:GSBRNA2T00024872001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44673 |
| PANTHER:PTHR44673:SF1 | ProteinID:CDY58588 | ProteinID:CDY58588.1 | SUPFAM:SSF52047 | UniParc:UPI0004EDE5B1 | UniProt:A0A078J3W9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g48440DBnaC08g48440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3W9]
Coordinates
chrLK033681:-:33120..33748
Molecular Weight (calculated)
14449.4 Da
IEP (calculated)
4.583
GRAVY (calculated)
0.133
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLVLSLAP KFVNLQTLIL RQDKPELEDN AVDAIENHCH ELQELDLSKK NQCDGFMSLA YRCPDLRTLD LCGCVLITGH WGYTNALTPS VVQAVYDKFP
101: PLHTCSLVMS GLSVLDDVCA LCLYPSGSSC GS
101: PLHTCSLVMS GLSVLDDVCA LCLYPSGSSC GS
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.