Factsheet for PGSC0003DMT400063955

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g063380.2.1	Tomato	cytosol	96.19	90.11
CDX88336	Canola	cytosol	70.97	74.69
KRH64574	Soybean	cytosol	68.92	73.21
Bra015699.1-P	Field mustard	cytosol	74.78	72.03
CDX87549	Canola	cytosol	74.78	71.83
Bra016422.1-P	Field mustard	cytosol	74.19	71.67
AT1G21410.1	Thale cress	cytosol	74.49	70.56
Bra003692.1-P	Field mustard	cytosol	73.61	69.92
CDX96592	Canola	cytosol	74.19	69.89
CDX68067	Canola	cytosol	73.31	69.64
CDX79184	Canola	cytosol	73.31	69.64
CDY67973	Canola	plasma membrane	73.9	69.61
AT1G77000.1	Thale cress	cytosol	71.85	68.06
KRH15905	Soybean	cytosol	72.73	66.85
KRH18090	Soybean	cytosol	73.31	66.67
GSMUA_Achr10P...	Banana	cytosol	69.21	66.48
KRH53355	Soybean	cytosol	72.14	66.13
Zm00001d038224_P004	Maize	cytosol	70.67	65.49
EES18256	Sorghum	cytosol, nucleus, plastid	70.67	65.31
GSMUA_AchrUn_...	Banana	cytosol	69.79	64.67
TraesCS1A01G264900.1	Wheat	cytosol	69.5	64.05
TraesCS1D01G265100.1	Wheat	cytosol	69.21	63.78
CDY58589	Canola	extracellular	24.34	63.36
GSMUA_Achr6P18620_001	Banana	cytosol	67.74	62.94
VIT_18s0001g15010.t01	Wine grape	mitochondrion	78.89	62.85
HORVU1Hr1G065030.2	Barley	cytosol	69.79	62.8
Os05t0425700-01	Rice	cytosol	69.21	62.77
TraesCS1B01G275600.1	Wheat	cytosol	69.21	62.27
CDY58588	Canola	extracellular	23.75	61.36
Os01t0881900-01	Rice	cytosol	68.04	61.21
TraesCS3D01G402900.2	Wheat	cytosol	68.04	61.05
TraesCS3A01G407700.1	Wheat	cytosol	68.04	61.05
EES03986	Sorghum	cytosol	68.04	60.89
TraesCS3B01G440600.2	Wheat	cytosol	67.74	60.63
HORVU3Hr1G091200.4	Barley	cytosol	67.74	55.0
Zm00001d000224_P001	Maize	cytosol	68.62	54.04
PGSC0003DMT400029999	Potato	cytosol	21.11	17.22
PGSC0003DMT400074998	Potato	cytosol	17.3	17.05
PGSC0003DMT400094835	Potato	cytosol	11.73	16.33
PGSC0003DMT400053176	Potato	cytosol	16.42	14.36
PGSC0003DMT400079115	Potato	cytosol	24.93	14.0
PGSC0003DMT400089433	Potato	mitochondrion	17.89	13.29
PGSC0003DMT400007545	Potato	cytosol	24.34	13.03
PGSC0003DMT400063732	Potato	cytosol	23.75	12.64
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	23.46	12.46
PGSC0003DMT400040977	Potato	nucleus	24.34	12.41
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	24.05	12.33
PGSC0003DMT400064250	Potato	mitochondrion	19.06	11.82
PGSC0003DMT400053918	Potato	cytosol	18.77	11.66
PGSC0003DMT400042949	Potato	cytosol	17.6	10.87
PGSC0003DMT400008648	Potato	cytosol	4.4	8.98
PGSC0003DMT400091765	Potato	cytosol	18.18	8.78

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1CBI1	PFAM:PF00646	PFAM:PF13516	EnsemblPlantsGene:PGSC0003DMG400024857	PGSC:PGSC0003DMG400024857
EnsemblPlants:PGSC0003DMT400063955	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002964B7B	:	:	:	:	:

Description

F-box protein SKP2A [Source:PGSC_GENE;Acc:PGSC0003DMG400024857]

Coordinates

chr4:+:57706688..57710325

Molecular Weight (calculated)

37645.9 Da

IEP (calculated)

7.667

GRAVY (calculated)

0.082

Length

341 amino acids

Sequence
(BLAST)

001: MGGGVMMMGE WKDIPMELLL RIASLVDDRT VIVASGVCSG WRDAISWGLT RLSLSWCKRN MNNLVLTLAP KFTKLQVLTL RQDLPQLEDV GVETIANHCH
101: ELQDLDLSKS FKLTDRSLYA LAHGCPNLTK LNISGCSAFS DSAVAYLAEH CRNLRVLNLC GCVKAATDKA LKAIGYYCNR LQTVNLGWCD KVGDEGVMSL
201: AYGCPDLRAL DLCGCVLITD ETVIALANNC THLRSLGLYF CQYITDRAMY SLAQSRVKNK HEMWASMKKH RYEDEGLMNL NISQCTALTP PAVQAVCEAF
301: PALHTCPERH SLIISGCLNL TSVHCACSVQ AHRARVLHPA H

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.