Factsheet for PGSC0003DMT400053918

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044220.1.1	Tomato	cytosol	95.63	95.63
PGSC0003DMT400064250	Potato	mitochondrion	72.86	72.73
VIT_07s0129g01110.t01	Wine grape	plastid	57.74	56.31
AT5G67250.1	Thale cress	cytosol	53.92	56.17
CDX81326	Canola	cytosol	52.46	54.96
KRH28425	Soybean	cytosol	52.64	54.94
KRH77049	Soybean	cytosol	52.09	54.79
CDY18646	Canola	cytosol	52.28	54.77
CDX83114	Canola	cytosol	49.54	54.73
Bra037120.1-P	Field mustard	cytosol	52.28	54.56
Bra029994.1-P	Field mustard	cytosol	50.64	54.4
CDX68575	Canola	cytosol	50.09	53.82
GSMUA_Achr3P28280_001	Banana	plastid	47.54	52.94
PGSC0003DMT400008648	Potato	cytosol	16.03	52.69
KRH04530	Soybean	cytosol	51.73	52.69
AT3G50080.1	Thale cress	cytosol	49.91	52.49
KRH57971	Soybean	cytosol	52.09	51.16
GSMUA_Achr2P05250_001	Banana	cytosol	44.08	49.79
GSMUA_Achr9P11380_001	Banana	cytosol	40.26	49.33
GSMUA_Achr9P22570_001	Banana	plastid	39.34	49.09
GSMUA_Achr8P15580_001	Banana	cytosol	36.43	49.02
GSMUA_Achr4P12920_001	Banana	plastid	44.81	48.14
Zm00001d019677_P001	Maize	cytosol	44.99	47.05
OQU89081	Sorghum	cytosol	44.81	46.86
TraesCS5A01G161400.1	Wheat	cytosol, plastid	44.63	46.49
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	44.26	46.11
TraesCS5B01G158800.1	Wheat	plastid	44.26	46.11
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.43	45.35
Os04t0505700-01	Rice	cytosol, mitochondrion	33.7	44.58
HORVU5Hr1G050420.1	Barley	plastid	44.44	44.2
KXG26667	Sorghum	plastid	37.52	44.02
Zm00001d003103_P001	Maize	plastid	41.17	43.46
TraesCS2A01G359900.1	Wheat	cytosol	42.08	42.7
Zm00001d025808_P001	Maize	plastid	42.26	42.49
Zm00001d025812_P001	Maize	plastid	42.26	42.49
PGSC0003DMT400091765	Potato	cytosol	54.46	42.35
HORVU0Hr1G005070.1	Barley	plastid	41.71	41.04
GSMUA_Achr9P18840_001	Banana	plastid	44.44	33.42
CDY01426	Canola	cytosol	53.19	26.96
CDY12824	Canola	nucleus	53.01	26.7
PGSC0003DMT400029999	Potato	cytosol	15.48	20.33
PGSC0003DMT400053176	Potato	cytosol	14.03	19.74
PGSC0003DMT400007545	Potato	cytosol	22.04	19.0
PGSC0003DMT400079115	Potato	cytosol	20.77	18.78
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	11.66	18.77
PGSC0003DMT400089433	Potato	mitochondrion	14.94	17.86
PGSC0003DMT400040977	Potato	nucleus	21.49	17.64
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	20.4	17.45
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	20.58	16.99
PGSC0003DMT400042949	Potato	cytosol	16.94	16.85
PGSC0003DMT400074998	Potato	cytosol	10.56	16.76
PGSC0003DMT400063732	Potato	cytosol	19.13	16.38
PGSC0003DMT400094835	Potato	cytosol	7.1	15.92
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.65	13.96
Zm00001d037295_P001	Maize	mitochondrion	5.83	13.11
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.46	12.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102583494	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1BVM3	PFAM:PF00646	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400020918	PGSC:PGSC0003DMG400020918	EnsemblPlants:PGSC0003DMT400053918	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00029568CD	RefSeq:XP_006343196.1	SEG:seg	:

Description

Avr9/Cf-9 rapidly elicited protein 189 [Source:PGSC_GENE;Acc:PGSC0003DMG400020918]

Coordinates

chr3:+:7598006..7600318

Molecular Weight (calculated)

59744.2 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.034

Length

549 amino acids

Sequence
(BLAST)

001: MGQSSSAHGF SPTDSNYPHH RCSGTGHSQS EFFYPTLSEE DDFPISQPCE NRDYTDGLPD ECLALIFQSL SSGDRKRSSL VCRRWLLVEG VSRHRLSLNA
101: KAEIIPDIPT IFSRFDSVTK LALRCDRRSV SINDEALILI SHRCVNLTRL KLRGCRDITD LGMACLAKNC EKLKKFSCGS CMFGAEGMNA LLINSISLEE
201: LSVKRLRCMN HTVSVEPISI GSNAACSLKS ICLKELYNGQ CFGPLIMGSK NLKTLKLLRC LGDWDRVLET IASRENHLVE IHLERVQVSD IGLRAISKFS
301: DLEILHLVKA PECTDAGVVD VARHCKLLRK VHIDGWRTNR IGDVGLGAIG EYSVNLKELV IMGLNPTVTS LLAIASNCQK LERLALCGSE SIGDAEVTCI
401: ATKCMALKKL CIKGCEVTDE GIVSFAWGCP NLVKIKVKKC KNVTGEVADL LRSRRGSLTV NLDVGEVDVE VVDGSASDGG ALEEGIEFPP IARTVPILGA
501: GGVVDIDTPS TGNFGRSSSS TSRIGFLGGR GFVACTFRRW SNGNANENL

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.