Factsheet for HORVU0Hr1G005070.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	77.06	97.51
TraesCS2A01G359900.1	Wheat	cytosol	89.96	92.79
Os04t0505700-01	Rice	cytosol, mitochondrion	65.23	87.71
KXG26667	Sorghum	plastid	69.0	82.27
Zm00001d003103_P001	Maize	plastid	76.16	81.73
Zm00001d025808_P001	Maize	plastid	75.81	77.47
Zm00001d025812_P001	Maize	plastid	75.63	77.29
GSMUA_Achr8P15580_001	Banana	cytosol	40.32	55.15
GSMUA_Achr9P11380_001	Banana	cytosol	44.09	54.91
PGSC0003DMT400008648	Potato	cytosol	14.87	49.7
Solyc04g078490.1.1	Tomato	cytosol	43.37	45.32
VIT_18s0001g09940.t01	Wine grape	plastid	42.83	44.18
Bra032213.1-P	Field mustard	plastid	40.14	43.58
CDY43846	Canola	plastid	40.14	43.58
CDX81326	Canola	cytosol	40.86	43.51
CDY25663	Canola	plastid	39.96	43.39
KRH15408	Soybean	plastid	42.47	43.17
AT1G47056.1	Thale cress	cytosol, plastid	39.96	43.05
KRH28425	Soybean	cytosol	40.5	42.97
Bra037120.1-P	Field mustard	cytosol	40.32	42.78
CDY18646	Canola	cytosol	40.14	42.75
KRH77049	Soybean	cytosol	39.78	42.53
CDX83114	Canola	cytosol	37.63	42.25
HORVU5Hr1G050420.1	Barley	plastid	41.76	42.21
AT5G67250.1	Thale cress	cytosol	39.78	42.13
CDX68575	Canola	cytosol	38.35	41.88
Bra029994.1-P	Field mustard	cytosol	38.35	41.88
PGSC0003DMT400053918	Potato	cytosol	41.04	41.71
Solyc03g044220.1.1	Tomato	cytosol	40.86	41.53
VIT_07s0129g01110.t01	Wine grape	plastid	41.76	41.39
KRH05631	Soybean	plastid	41.58	41.21
AT4G07400.1	Thale cress	nucleus	40.86	41.16
Solyc02g092990.1.1	Tomato	plastid	40.5	41.09
PGSC0003DMT400064250	Potato	mitochondrion	40.14	40.73
KRH04530	Soybean	cytosol	39.25	40.63
AT3G50080.1	Thale cress	cytosol	37.81	40.42
KRH57971	Soybean	cytosol	39.61	39.53
KRH52037	Soybean	cytosol	27.78	38.37
PGSC0003DMT400091765	Potato	cytosol	42.65	33.71
CDY12824	Canola	nucleus	41.22	21.1
CDY01426	Canola	cytosol	40.86	21.05
HORVU6Hr1G059950.1	Barley	cytosol	15.59	20.86
KRH61346	Soybean	cytosol	24.19	19.34
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	9.14	19.17
HORVU7Hr1G090240.1	Barley	cytosol	18.28	18.92
HORVU4Hr1G014630.1	Barley	cytosol	12.9	18.65
HORVU3Hr1G012530.12	Barley	cytosol	11.29	17.95
HORVU1Hr1G065030.2	Barley	cytosol	12.19	17.94
HORVU6Hr1G038430.3	Barley	plastid	20.25	17.3
HORVU3Hr1G091200.4	Barley	cytosol	12.9	17.14
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	18.46	15.26
HORVU5Hr1G029670.1	Barley	mitochondrion	13.8	15.01
HORVU5Hr1G000950.4	Barley	plastid	10.75	13.42
HORVU5Hr1G024060.1	Barley	cytosol, plastid	17.2	11.39

Protein Annotations

EnsemblPlants:HORVU0Hr1G005070.1	EnsemblPlantsGene:HORVU0Hr1G005070	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	PFAM:PF12937	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000B469184	UniProt:A0A287DW01	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chrchrUn:+:28840600..28842349

Molecular Weight (calculated)

57306.8 Da

IEP (calculated)

8.467

GRAVY (calculated)

0.075

Length

558 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXSCSSN RTRCCPSPPP PHPPPVAPPM PAGAGSGTGS LDASPSPSTF AAPPPSRDHT QDLPDEILTL VFASLTPAER NACSLTCARW
101: KEVDAATRHR LSLDARAMLG YNTPAIFSRF TAVTKLALRC ARGSGADSLN DGGAAAVAAT LPSARLARLK LRGLRQLSDA GLASLAAAAP VLRKLSVASC
201: TFGPKAFVAV LQSCPLLEDL SVKRLRGLPD TSGAVTATAI TEDILFPLAM ALRSVCLKDL YSALCFVPLV SSSPNLRSLK ILRCSGAWDL PLEVIAARAP
301: GLVEIHLEKL QVGDRGLCAV SACANLEVLF LVKTPECTDE GIISVAQNCH KLRKLHIDGW RTNRIGDRGL MAVARGCPDL QELVLIGVNP TVQSLRMLGE
401: HCRALERLAL CGCETVGDTE IICLAERCAA LKKLCIKGCP VTDRGMGALN GGCPSLVKVK LKRCRGVSYQ CVEHLKMARG DSFSISLDIV LEHDAGAPSE
501: NGVQETGQQA QITELTGQMA AMDLPTNAAG AQSFAQANSR MRSVMSALRR RFGNPPPA

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.