Factsheet for Bra032213.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43846	Canola	plastid	99.81	99.81
AT1G47056.1	Thale cress	cytosol, plastid	83.27	82.63
Solyc04g078490.1.1	Tomato	cytosol	63.42	61.05
VIT_18s0001g09940.t01	Wine grape	plastid	63.23	60.07
KRH15408	Soybean	plastid	62.45	58.47
PGSC0003DMT400008648	Potato	cytosol	18.29	56.29
KRH05631	Soybean	plastid	61.48	56.13
GSMUA_Achr3P28280_001	Banana	plastid	50.0	52.13
GSMUA_Achr4P12920_001	Banana	plastid	49.81	50.1
GSMUA_Achr2P05250_001	Banana	cytosol	46.5	49.18
Bra037120.1-P	Field mustard	cytosol	50.19	49.05
Bra029994.1-P	Field mustard	cytosol	48.44	48.73
GSMUA_Achr9P22570_001	Banana	plastid	41.63	48.64
GSMUA_Achr8P15580_001	Banana	cytosol	37.55	47.3
OQU89081	Sorghum	cytosol	48.25	47.24
GSMUA_Achr9P11380_001	Banana	cytosol	41.05	47.1
Os04t0505700-01	Rice	cytosol, mitochondrion	37.74	46.75
TraesCS5A01G161400.1	Wheat	cytosol, plastid	47.86	46.68
TraesCS5B01G158800.1	Wheat	plastid	47.67	46.49
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	47.67	46.49
Zm00001d019677_P001	Maize	cytosol	47.28	46.29
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	38.72	45.12
HORVU5Hr1G050420.1	Barley	plastid	47.86	44.57
Zm00001d003103_P001	Maize	plastid	44.94	44.42
KXG26667	Sorghum	plastid	40.27	44.23
PGSC0003DMT400091765	Potato	cytosol	59.73	43.48
Zm00001d025812_P001	Maize	plastid	45.72	43.04
Zm00001d025808_P001	Maize	plastid	45.33	42.67
TraesCS2A01G359900.1	Wheat	cytosol	43.58	41.4
HORVU0Hr1G005070.1	Barley	plastid	43.58	40.14
GSMUA_Achr9P18840_001	Banana	plastid	48.64	34.25
Bra009671.1-P	Field mustard	cytosol	17.51	22.22
Bra029367.1-P	Field mustard	cytosol	17.12	21.41
Bra007401.1-P	Field mustard	cytosol	8.75	18.29
Bra034254.1-P	Field mustard	cytosol	21.98	18.17
Bra036542.1-P	Field mustard	cytosol	21.6	18.02
Bra012785.1-P	Field mustard	cytosol	21.98	17.99
Bra009835.1-P	Field mustard	cytosol	21.6	17.85
Bra003692.1-P	Field mustard	cytosol	11.67	16.71
Bra015699.1-P	Field mustard	cytosol	11.48	16.67
Bra009931.1-P	Field mustard	cytosol	20.62	16.56
Bra016422.1-P	Field mustard	cytosol	11.28	16.43
Bra036607.1-P	Field mustard	cytosol	20.04	16.12
Bra005669.1-P	Field mustard	cytosol	20.82	16.02
Bra029656.1-P	Field mustard	cytosol	12.26	15.95
Zm00001d037295_P001	Maize	mitochondrion	6.81	14.34
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.84	13.51
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.84	12.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra032213	EnsemblPlants:Bra032213.1	EnsemblPlants:Bra032213.1-P
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4ETT1	PFAM:PF12937
PFAM:PF13516	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002547D9E
SEG:seg	:	:	:	:	:

Description

AT1G47056 (E=1e-231) VFB1 | VFB1 (VIER F-BOX PROTEINE 1); ubiquitin-protein ligase

Coordinates

chrA05:+:12854101..12855645

Molecular Weight (calculated)

56037.5 Da

IEP (calculated)

8.437

GRAVY (calculated)

0.016

Length

514 amino acids

Sequence
(BLAST)

001: MGQSTSAAGK IILNGRRTKL LSSNSSIETE VSPDYTSYIP DECLALVFQF LNSGNRKRCA LVCRRWMIVE GRNRHRLSLH ARSALITWIP SLFSRFDSVV
101: KLSLKCDRRS VSINDEALAM ISLRCRNLKR LKLRACRELT YKGMATFAEN CKGLNILSCG SCDFGAEGVK AVLDHCSSLE ELSIKRLRNF TDSSHEPIGP
201: GLAASSLKSI CLKELYIGEC FGPVIAGAKN LRSLKLFRCS GDWDMVLEEM AVKEHGIVEI HLERMQVTDV ALAAISNCSS LEILHLVKTP ECTNGGLAGI
301: AEKCKCLRKL HIDGWKANLI GDEGLVAVAK FCSKLQELVL IGVNPTTLSL AMLAVKCQNL ERLALCGCDT FGDPELSCIA AKCPSLRKLC IKNCPISDLG
401: IENLANGCPG LIKVKIKKCR GVMGGCADWL RTVRPMLSVN ADTVEPEGHE EGSNDAVEGG LQENRIEFPS LNSQIVAPSL ASSSRSRSGY FKSRVGLFSG
501: ISLVACTLRQ RESS

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.