Factsheet for Bra009931.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88253	Canola	cytosol	99.53	99.53
CDX80608	Canola	cytosol	97.66	97.66
Bra036607.1-P	Field mustard	cytosol	88.12	88.26
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	86.41	86.14
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	60.78	60.5
KRH68483	Soybean	cytosol	58.59	58.5
KRG96764	Soybean	cytosol	57.97	57.88
PGSC0003DMT400063732	Potato	cytosol	52.81	52.73
Solyc01g099970.2.1	Tomato	extracellular	50.78	52.5
Zm00001d041635_P002	Maize	cytosol	51.09	49.32
GSMUA_Achr6P20450_001	Banana	cytosol	50.62	49.09
Os12t0552700-01	Rice	cytosol, peroxisome	28.59	49.06
KXG23663	Sorghum	cytosol	50.62	48.94
Zm00001d023825_P001	Maize	cytosol	50.31	48.79
GSMUA_Achr11P...	Banana	cytosol	49.69	48.48
TraesCS5A01G091800.2	Wheat	cytosol	49.69	48.11
TraesCS5B01G097800.2	Wheat	cytosol	49.53	47.96
TraesCS5D01G103900.3	Wheat	cytosol	49.69	47.75
Zm00001d048695_P001	Maize	cytosol	47.66	47.07
KXG29052	Sorghum	plastid	48.12	46.67
HORVU5Hr1G024060.1	Barley	cytosol, plastid	49.69	37.72
Bra005669.1-P	Field mustard	cytosol	37.03	35.48
Bra009671.1-P	Field mustard	cytosol	17.81	28.15
Bra029367.1-P	Field mustard	cytosol	17.34	27.01
Bra012785.1-P	Field mustard	cytosol	23.59	24.04
Bra007401.1-P	Field mustard	cytosol	9.22	23.98
Bra029656.1-P	Field mustard	cytosol	14.53	23.54
Bra015699.1-P	Field mustard	cytosol	11.88	21.47
Bra034254.1-P	Field mustard	cytosol	20.62	21.22
Bra029994.1-P	Field mustard	cytosol	16.56	20.74
Bra009835.1-P	Field mustard	cytosol	20.16	20.74
Bra032213.1-P	Field mustard	plastid	16.56	20.62
Bra016422.1-P	Field mustard	cytosol	11.25	20.4
Bra036542.1-P	Field mustard	cytosol	19.38	20.13
Bra003692.1-P	Field mustard	cytosol	11.25	20.06
Bra037120.1-P	Field mustard	cytosol	16.09	19.58

Protein Annotations

EnsemblPlants:Bra009931.1	EnsemblPlants:Bra009931.1-P	EnsemblPlantsGene:Bra009931	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000253F498	UniProt:M4D0D3	MapMan:35.1	:	:	:

Description

AT5G27920 (E=4e-298) | F-box family protein

Coordinates

chrA06:+:18152157..18154718

Molecular Weight (calculated)

70579.5 Da

IEP (calculated)

8.223

GRAVY (calculated)

0.142

Length

640 amino acids

Sequence
(BLAST)

001: MSHSILSALS EDLLVRVYGF LDPPCRKTWR LVSREFHRVD SLSRTSIRIL RVEFLPALLF KHPNLSSLDL SVCPKLDDDV VLRIALDGAV STSRLKSLNL
101: SRATAVRARG LETLARLCRA LERVDVSHCW AFGDREAAAL SVAAGLRELK MDKCLSLSDV GLARIVVGCS KLNKISLKWC MEISDLGIDL LCKKCKDLKS
201: LDVSYLKITN ESVRSIALLP KLEVLEMVSC PLIDDAGLQY LENGSPSLKE IDVTRCDRVS SSSLISIVKG HPDLQHLKAS HCISEISLSF LHNIKALKHL
301: KTLWIDGARV SDSSLLTLSA SCRALTELGV SRCVGVTDIG MMGLARNCSN LKALNLACCG FVTDAAISAV AQSCLNLESL QLESCHLITE KGLQSLGCYS
401: KRLQELDLTD CDGVNDRGLE YISKCSNLLR LKLGLCANIS DKGIFHIGSK CSKLLELDLY RCAGFGDDGL AAISRGCKSL NRLILSYWGE LTDTGAEKIR
501: QLEQLTHLEL RGIKNITGTG LAAIARGCKK LAYLDLKQCE NIDDSGFWAL AYFSRNLRQI NLCNCSVSDT ALCMLMSNLS RVQDVDLVHL NRVTVEGFEF
601: ALRACCNRLK KLKLLAPLRF LLSSELLEVL HARGCRIRWD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.