Factsheet for Os12t0552700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023825_P001	Maize	cytosol	87.94	49.7
TraesCS5A01G091800.2	Wheat	cytosol	87.94	49.62
KXG23663	Sorghum	cytosol	87.94	49.55
TraesCS5B01G097800.2	Wheat	cytosol	87.67	49.47
Zm00001d041635_P002	Maize	cytosol	87.67	49.32
TraesCS5D01G103900.3	Wheat	cytosol	87.4	48.95
HORVU5Hr1G024060.1	Barley	cytosol, plastid	88.2	39.03
GSMUA_Achr11P...	Banana	cytosol	60.05	34.15
GSMUA_Achr6P20450_001	Banana	cytosol	58.98	33.33
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	50.94	29.55
KRH68483	Soybean	cytosol	50.67	29.49
KRG96764	Soybean	cytosol	50.13	29.17
Bra036607.1-P	Field mustard	cytosol	49.6	28.95
CDY53337	Canola	cytosol	49.33	28.8
CDX88253	Canola	cytosol	49.33	28.75
Bra009931.1-P	Field mustard	cytosol	49.06	28.59
CDX80608	Canola	cytosol	49.06	28.59
CDY19741	Canola	cytosol	47.19	28.53
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	48.26	28.04
Os02t0636400-01	Rice	cytosol	14.75	27.5
PGSC0003DMT400063732	Potato	cytosol	46.65	27.15
Solyc01g099970.2.1	Tomato	extracellular	43.7	26.33
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	38.34	20.52
Os02t0281150-01	Rice	cytosol	16.35	17.13
Os06t0605900-01	Rice	cytosol	23.86	14.19
Os04t0505700-01	Rice	cytosol, mitochondrion	15.55	13.98
Os02t0200900-01	Rice	cytosol	22.52	12.73
Os10t0148800-01	Rice	cytosol	15.82	11.85
Os01t0881900-01	Rice	cytosol	11.8	11.61
Os05t0425700-01	Rice	cytosol	11.26	11.17
Os11t0264200-01	Rice	cytosol	10.99	10.76
Os09t0113000-01	Rice	cytosol, nucleus	2.14	9.88
Os11t0641200-01	Rice	cytosol	5.36	5.59
Os11t0108932-01	Rice	nucleus	0.8	0.96

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A0P0YB49	ProteinID:BAT17581.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
EnsemblPlantsGene:Os12g0552700	EnsemblPlants:Os12t0552700-01	PFAM:PF13516	PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000393B7DA	SEG:seg	:	:	:

Description

Similar to Leucine Rich Repeat family protein, expressed. (Os12t0552700-01)

Coordinates

chr12:+:22459823..22461947

Molecular Weight (calculated)

40518.0 Da

IEP (calculated)

7.378

GRAVY (calculated)

0.257

Length

373 amino acids

Sequence
(BLAST)

001: QKLNAADSLH EMRQSFLSNL AKLKDTLTVL RLDGLEVSSS VLLAIGGCNN LVEIGLSKCN GVTDEGISSL VTQCSHLRVI DLTCCNLLTN NALDSIAENC
101: KMVEHLRLES CSSISEKGLE QIATSCPNLK EIDLTDCGVN DAALQHLAKC SELLVLKLGL CSSISDKGLA FISSSCGKLI ELDLYRCNSI TDDGLAALAN
201: GCKKIKMLNL CYCNKITDSG LGHLGSLEEL TNLELRCLVR ITGIGISSVA IGCKNLIEID LKRCYSVDDA GLWALARYAL NLRQLTISYC QVTGLGLCHL
301: LSSLRCLQDV KMVHLSWVSI EGFEMALRAA CGRLKKLKML SGLKSVLSPE LLQMLQACGC RIRWVNKPLV YKD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [extracellular,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.