Factsheet for Os12t0108500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0108932-01	Rice	nucleus	42.04	93.91
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	74.03	76.44
TraesCS5B01G149400.1	Wheat	mitochondrion	74.75	76.39
TraesCS5A01G150800.2	Wheat	mitochondrion	74.61	76.25
TraesCS5D01G155900.1	Wheat	mitochondrion	73.17	73.59
EES07863	Sorghum	nucleus	72.45	73.08
KXG22793	Sorghum	nucleus	72.6	72.7
Zm00001d044622_P002	Maize	mitochondrion	72.88	72.16
Zm00001d005072_P003	Maize	mitochondrion	69.3	66.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	56.96	55.6
GSMUA_Achr7P22290_001	Banana	cytosol	56.96	55.45
VIT_08s0058g00700.t01	Wine grape	cytosol	51.36	54.0
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	51.22	53.68
Solyc10g076290.1.1	Tomato	cytosol	50.93	52.59
KRH76059	Soybean	cytosol, nucleus, peroxisome	50.07	52.01
VIT_06s0004g07520.t01	Wine grape	cytosol	49.21	51.81
AT5G01720.1	Thale cress	vacuole	48.21	50.53
KRH65525	Soybean	cytosol, peroxisome, plastid	51.08	50.28
Bra005669.1-P	Field mustard	cytosol	47.92	50.0
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	48.06	49.56
KRH17127	Soybean	cytosol	46.2	49.39
CDX80753	Canola	endoplasmic reticulum	47.35	48.82
KRH72766	Soybean	cytosol	35.01	45.35
Os12t0552700-01	Rice	cytosol, peroxisome	20.52	38.34
Os11t0264200-01	Rice	cytosol	14.06	25.72
Os10t0148800-01	Rice	cytosol	17.65	24.7
Os11t0641200-01	Rice	cytosol	12.63	24.58
Os02t0636400-01	Rice	cytosol	7.03	24.5
Os01t0881900-01	Rice	cytosol	12.48	22.96
Os02t0200900-01	Rice	cytosol	20.66	21.82
Os05t0425700-01	Rice	cytosol	11.62	21.54
Os06t0605900-01	Rice	cytosol	19.08	21.21
Os02t0281150-01	Rice	cytosol	10.76	21.07
Os04t0505700-01	Rice	cytosol, mitochondrion	11.76	19.76
Os09t0113000-01	Rice	cytosol, nucleus	1.29	11.11

Protein Annotations

EnsemblPlants:Os12t0108500-01	EnsemblPlantsGene:Os12g0108500	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44309
PANTHER:PTHR44309:SF3	PFAM:PF13516	ProteinID:BAT12344.1	ProteinID:BAT15526.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000393B40E	UniProt:A0A0P0Y6A8	MapMan:35.1	:	:

Description

F-box protein 636Similar to Leucine Rich Repeat family protein, expressed. (Os12t0108500-01)

Coordinates

chr12:+:464682..468347

Molecular Weight (calculated)

75936.5 Da

IEP (calculated)

8.120

GRAVY (calculated)

0.186

Length

697 amino acids

Sequence
(BLAST)

001: PNAHHYYYLP FPSLVSVNFA MASPAPTHHA KRRRLALPPP PPPHLNDLAD ELLFLILDRA AAHDPRALKS FSLVSRACHA AESRHRRVLR PFRPDLLPAA
101: LARYPAISHL DLSLCPRLPD AALAALPAAP FVSAVDLSRS RGFGAAGLAA LVAAFPNLTD LDLSNGLDLG DAAAAEVAKA RRLQRLSLSR CKRITDMGLG
201: CIAVGCPDLR ELSLKWCIGV THLGLDLLAL KCNKLNILDL SYTMIVKKCF PAIMKLQNLQ VLLLVGCNGI DDDALTSLDQ ECSKSLQVLD MSNSYNVTHV
301: GVLSIVKAMP NLLELNLSYC SPVTPSMSSS FEMIHKLQKL KLDGCQFMDD GLKSIGKSCV SLRELSLSKC SGVTDTDLSF VVPRLKNLLK LDVTCCRKIT
401: DVSLAAITTS CPSLISLRME SCSLVSSKGL QLIGRRCTHL EELDLTDTDL DDEGLKALSG CSKLSSLKIG ICLRITDEGL RHVSKSCPDL RDIDLYRSGA
501: ISDEGVTHIA QGCPMLESIN MSYCTKLTDC SLRSLSKCIK LNTLEIRGCP MVSSAGLSEI ATGCRLLSKL DIKKCFEIND MGMIFLSQFS HNLRQINLSY
601: CSVTDIGLIS LSSICGLQNM TIVHLAGVTP NGLIAALMVC GLRKVKLHEA FKSMVPSHML KVVEARGCLF QWINKPYQVA VEPCDVWKQQ SQDLLVQ

Best Arabidopsis Sequence Match ( AT5G01720.1 )
(BLAST)

001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP

Arabidopsis Description

FBL3F-box/LRR-repeat protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU5]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.