Factsheet for VIT_06s0004g07520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00700.t01	Wine grape	cytosol	67.82	67.72
KRH17127	Soybean	cytosol	58.16	59.05
GSMUA_Achr7P22290_001	Banana	cytosol	60.12	55.59
KRH72766	Soybean	cytosol	45.17	55.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	58.76	54.48
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	51.81	49.21
Zm00001d044622_P002	Maize	mitochondrion	52.11	49.01
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	49.7	48.74
TraesCS5A01G150800.2	Wheat	mitochondrion	49.85	48.39
TraesCS5B01G149400.1	Wheat	mitochondrion	49.85	48.39
KXG22793	Sorghum	nucleus	50.76	48.28
TraesCS5D01G155900.1	Wheat	mitochondrion	50.0	47.76
EES07863	Sorghum	nucleus	49.7	47.61
Zm00001d005072_P003	Maize	mitochondrion	50.3	45.93
Os11t0108932-01	Rice	nucleus	19.64	41.67
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	35.95	37.01
VIT_10s0071g00310.t01	Wine grape	cytosol	18.13	29.06
VIT_05s0020g02400.t01	Wine grape	cytosol	24.62	26.68
VIT_08s0007g07030.t01	Wine grape	cytosol	12.54	23.71
VIT_18s0001g09940.t01	Wine grape	plastid	18.43	22.55
VIT_04s0008g05470.t01	Wine grape	cytosol	21.0	20.84
VIT_07s0129g01110.t01	Wine grape	plastid	17.37	20.43
VIT_11s0016g05410.t01	Wine grape	cytosol	20.09	20.06
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	15.56	19.14
VIT_18s0001g15010.t01	Wine grape	mitochondrion	11.78	18.22

Protein Annotations

EntrezGene:100246775	wikigene:100246775	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB43430	ProteinID:CCB43430.1
UniProt:F6GUH6	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100246775	wikigene:LOC100246775	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF13516	PANTHER:PTHR44309	PANTHER:PTHR44309:SF1	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000210AC2F
ArrayExpress:VIT_06s0004g07520	EnsemblPlantsGene:VIT_06s0004g07520	EnsemblPlants:VIT_06s0004g07520.t01	RefSeq:XP_002277506	RefSeq:XP_002277506.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:8296018..8300552

Molecular Weight (calculated)

73202.3 Da

IEP (calculated)

7.895

GRAVY (calculated)

0.206

Length

662 amino acids

Sequence
(BLAST)

001: MQRQQKQQRF TNPFTLVTDE IIFAILDFLG HDPFSRKSFS LVCKSFYSVE SRHRKTLKPL RSDLLRRILL RYPVIDHLDL SLCPLNEGDS WDVILSLCKS
101: TLRSIKLSPS MFFANVGFSK LVMNCSDLVE IDLSNATEFT DSGAAAIAKA KNLERLWLVR CKLVSDIGIG CIAVGCRKLR LINLKWCLRV GDLGVGLIAM
201: KCKEIRCLDL SYLPITKKCL PSVLQLQHLE DLVLVGCFHI DLDGLTNLKQ GCKSLEVLNM SNCPCISHYG LSFITNGAEC LRQFNISYGP PVTLDLAKCL
301: QYFSNLQSIR LDGCIVTCSG MKAIGNWCAS LKELSLSKCS GVTDEGLSLI VQGHQELRKL DITCCRKITQ VSINSITNSC TCLTSLRMES CSLVQSEAFV
401: LIGQCCQFLE ELDVTDNEID DEGLKSIARC SKLSSLKLGI CLKITDDGIA HVGTGCPKLT EIDLYRCICI TDVGIEAIAH GCPDLEMINT AYCDKVTDAS
501: LESLSKCLRL KALEIRGCPG VSSVGLSAIA LGCRQLMMLD IKKCHHINDV GMVPLAQFSQ NLKQINFSYC SVTDVGLLAL ASISSLQNIT ILHLTGLTSN
601: GLAAALLACK GLMKVKLHRF FKRLLPHSLL DHMQSRGCVF QWRDKATTQV ETDPMEWKLH LG

Best Arabidopsis Sequence Match ( AT5G01720.1 )
(BLAST)

001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP

Arabidopsis Description

FBL3F-box/LRR-repeat protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU5]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.