Factsheet for VIT_18s0001g15010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	62.85	78.89
CDX88336	Canola	cytosol	58.88	77.78
Bra015699.1-P	Field mustard	cytosol	63.08	76.27
CDX87549	Canola	cytosol	63.08	76.06
Solyc04g063380.2.1	Tomato	cytosol	63.55	74.73
AT1G77000.1	Thale cress	cytosol	62.62	74.44
KRH64574	Soybean	cytosol	55.37	73.83
Bra016422.1-P	Field mustard	cytosol	60.51	73.37
CDX79184	Canola	cytosol	61.45	73.26
Bra003692.1-P	Field mustard	cytosol	61.22	72.98
CDX68067	Canola	cytosol	60.98	72.7
AT1G21410.1	Thale cress	cytosol	60.98	72.5
CDY67973	Canola	plasma membrane	61.22	72.38
CDX96592	Canola	cytosol	61.22	72.38
KRH18090	Soybean	cytosol	63.08	72.0
KRH15905	Soybean	cytosol	62.15	71.7
GSMUA_Achr6P18620_001	Banana	cytosol	59.81	69.75
EES18256	Sorghum	cytosol, nucleus, plastid	60.05	69.65
KRH53355	Soybean	cytosol	60.28	69.35
Zm00001d038224_P004	Maize	cytosol	59.58	69.29
Os05t0425700-01	Rice	cytosol	60.05	68.35
GSMUA_Achr10P...	Banana	cytosol	56.54	68.17
GSMUA_AchrUn_...	Banana	cytosol	58.18	67.66
HORVU1Hr1G065030.2	Barley	cytosol	59.35	67.02
TraesCS1D01G265100.1	Wheat	cytosol	57.48	66.49
TraesCS1A01G264900.1	Wheat	cytosol	57.48	66.49
TraesCS3A01G407700.1	Wheat	cytosol	58.18	65.53
TraesCS1B01G275600.1	Wheat	cytosol	57.94	65.44
TraesCS3D01G402900.2	Wheat	cytosol	57.94	65.26
Os01t0881900-01	Rice	cytosol	57.71	65.17
TraesCS3B01G440600.2	Wheat	cytosol	57.94	65.09
CDY58589	Canola	extracellular	19.63	64.12
EES03986	Sorghum	cytosol	56.07	62.99
CDY58588	Canola	extracellular	19.16	62.12
HORVU3Hr1G091200.4	Barley	cytosol	57.94	59.05
Zm00001d000224_P001	Maize	cytosol	55.84	55.2
VIT_10s0071g00310.t01	Wine grape	cytosol	17.99	18.64
VIT_08s0007g07030.t01	Wine grape	cytosol	14.25	17.43
VIT_04s0008g05470.t01	Wine grape	cytosol	22.66	14.54
VIT_05s0020g02400.t01	Wine grape	cytosol	20.33	14.24
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	20.56	13.69
VIT_11s0016g05410.t01	Wine grape	cytosol	20.33	13.12
VIT_07s0129g01110.t01	Wine grape	plastid	16.36	12.43
VIT_08s0058g00700.t01	Wine grape	cytosol	18.93	12.22
VIT_18s0001g09940.t01	Wine grape	plastid	14.95	11.83
VIT_06s0004g07520.t01	Wine grape	cytosol	18.22	11.78
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	14.49	11.52

Protein Annotations

EntrezGene:100255759	wikigene:100255759	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	ProteinID:CBI19930	ProteinID:CBI19930.3
UniProt:E0CQK1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	EntrezGene:LOC100255759	wikigene:LOC100255759	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	TIGR:TC57770	TMHMM:TMhelix	UniParc:UPI0001BE186C	ArrayExpress:VIT_18s0001g15010	EnsemblPlantsGene:VIT_18s0001g15010
EnsemblPlants:VIT_18s0001g15010.t01	RefSeq:XP_002268441	RefSeq:XP_002268441.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:13037311..13042185

Molecular Weight (calculated)

46520.7 Da

IEP (calculated)

7.191

GRAVY (calculated)

0.152

Length

428 amino acids

Sequence
(BLAST)

001: MWGTALRMQL KSQISSPYAS SALRLGPIYI VIIITFIGSC LAEDSRLCFL KDNLVFGTME MVGQGGEELE FCFERLVMGG DGRGGMDGGG VGVITEWKDV
101: PMELLLRIVA LVDDRTVIMA SGVCSGWRDA ICLGLTHLSL SWCKNNMNNL VLSLAPKFTK LQALTLRQDK PQLEDKAVEI IANYCHDLQD LDLSKSFKLS
201: DSSLYALAHG CPNLTKLNIS GCTAFSDAAL AHLTSFCRRL KILNLCGCGK AASNRALQAI GRNCSQLQSL NLGWCEDVSD AGVMSLAYGC PDLRALDLCG
301: CVHITDESVI ALANRCLHLR SLGLYFCQNI TDKAMYSLAQ SRVKNKHEMW ESMKSRYSEE GLMNLNISQC TALTPPAVQA VCDSFPALHT CPGRHSLIIS
401: GCLSLTSVHC ACGVQAHRTA SQLSHPAH

Best Arabidopsis Sequence Match ( AT1G77000.2 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.