Factsheet for TraesCS1D01G265100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G264900.1	Wheat	cytosol	98.92	98.92
TraesCS1B01G275600.1	Wheat	cytosol	98.11	95.78
HORVU1Hr1G065030.2	Barley	cytosol	96.22	93.93
EES18256	Sorghum	cytosol, nucleus, plastid	82.16	82.38
Zm00001d038224_P004	Maize	cytosol	81.62	82.07
Os05t0425700-01	Rice	cytosol	82.43	81.12
TraesCS3D01G402900.2	Wheat	cytosol	77.3	75.26
GSMUA_Achr10P...	Banana	cytosol	67.84	70.7
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	63.78	69.21
GSMUA_Achr6P18620_001	Banana	cytosol	66.22	66.76
GSMUA_AchrUn_...	Banana	cytosol	65.14	65.49
KRH64574	Soybean	cytosol	56.76	65.42
Solyc04g063380.2.1	Tomato	cytosol	64.32	65.38
CDX88336	Canola	cytosol	56.49	64.51
AT1G21410.1	Thale cress	cytosol	62.43	64.17
Bra016422.1-P	Field mustard	cytosol	61.08	64.02
CDX87549	Canola	cytosol	60.54	63.1
Bra015699.1-P	Field mustard	cytosol	60.27	62.99
CDX96592	Canola	cytosol	61.35	62.71
CDY67973	Canola	plasma membrane	61.08	62.43
CDX79184	Canola	cytosol	59.73	61.56
KRH53355	Soybean	cytosol	61.62	61.29
Bra003692.1-P	Field mustard	cytosol	59.46	61.28
CDX68067	Canola	cytosol	59.19	61.0
KRH15905	Soybean	cytosol	61.08	60.92
KRH18090	Soybean	cytosol	61.35	60.53
AT1G77000.1	Thale cress	cytosol	58.65	60.28
CDY58589	Canola	extracellular	21.08	59.54
CDY58588	Canola	extracellular	20.54	57.58
VIT_18s0001g15010.t01	Wine grape	mitochondrion	66.49	57.48
TraesCS6D01G216400.1	Wheat	cytosol	21.35	18.94
TraesCS3D01G067600.2	Wheat	cytosol	15.14	16.0
TraesCS4D01G083300.1	Wheat	cytosol	16.49	15.8
TraesCS4D01G148000.1	Wheat	cytosol	23.51	13.92
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	19.19	13.47
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	15.68	13.15
TraesCS5D01G103900.3	Wheat	cytosol	22.7	12.61
TraesCS7D01G373800.1	Wheat	cytosol	21.35	12.14
TraesCS6D01G169200.1	Wheat	cytosol	20.81	11.86
TraesCS5D01G155900.1	Wheat	mitochondrion	21.89	11.69

Protein Annotations

EnsemblPlants:TraesCS1D01G265100.1	EnsemblPlantsGene:TraesCS1D01G265100	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44673
PANTHER:PTHR44673:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.1

Description

No Description!

Coordinates

chr1D:+:361034519..361037440

Molecular Weight (calculated)

39616.5 Da

IEP (calculated)

7.035

GRAVY (calculated)

0.098

Length

370 amino acids

Sequence
(BLAST)

001: MVSARSVDRQ LDACFSNLMV SSGGGRGQAE TGGAVPMLSG WKDLPMELLM RIISVAGDDR IVVVASGVCT GWRDALGWGV TNLSLSWCQQ NMNNLTISFA
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPRLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQSLNLGWC DSVTDEGVTS LASGCPDLWA LDLCGCVLIT DESVIALASG CPYLRSLGLY YCQNITDRAM YSLANSCVKS KRGSSSKDVD
301: GLANLNISQC TALTPPAVQA VCDSFPSLHT CPERHSLIIS GCLSLTNVHC ACGLQRHRAG SALQATSHAY

Best Arabidopsis Sequence Match ( AT1G77000.2 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.