Factsheet for Bra015699.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87549	Canola	cytosol	99.15	98.87
Bra003692.1-P	Field mustard	cytosol	92.94	91.64
AT1G77000.1	Thale cress	cytosol	90.68	89.17
Bra016422.1-P	Field mustard	cytosol	84.75	84.99
KRH64574	Soybean	cytosol	69.77	76.95
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	72.03	74.78
KRH15905	Soybean	cytosol	74.29	70.89
KRH53355	Soybean	cytosol	74.29	70.7
KRH18090	Soybean	cytosol	74.29	70.13
Solyc04g063380.2.1	Tomato	cytosol	72.03	70.05
Zm00001d038224_P004	Maize	cytosol	66.1	63.59
GSMUA_Achr10P...	Banana	cytosol	63.56	63.38
GSMUA_Achr6P18620_001	Banana	cytosol	65.54	63.22
VIT_18s0001g15010.t01	Wine grape	mitochondrion	76.27	63.08
EES18256	Sorghum	cytosol, nucleus, plastid	64.69	62.06
GSMUA_AchrUn_...	Banana	cytosol	64.41	61.96
Os05t0425700-01	Rice	cytosol	64.12	60.37
TraesCS1D01G265100.1	Wheat	cytosol	62.99	60.27
TraesCS1A01G264900.1	Wheat	cytosol	62.99	60.27
Os01t0881900-01	Rice	cytosol	64.12	59.89
HORVU1Hr1G065030.2	Barley	cytosol	63.84	59.63
TraesCS1B01G275600.1	Wheat	cytosol	63.28	59.1
TraesCS3A01G407700.1	Wheat	cytosol	63.28	58.95
TraesCS3D01G402900.2	Wheat	cytosol	63.28	58.95
TraesCS3B01G440600.2	Wheat	cytosol	62.99	58.53
EES03986	Sorghum	cytosol	62.71	58.27
HORVU3Hr1G091200.4	Barley	cytosol	62.99	53.1
Zm00001d000224_P001	Maize	cytosol	63.28	51.73
Bra009671.1-P	Field mustard	cytosol	21.47	18.77
Bra029367.1-P	Field mustard	cytosol	19.77	17.03
Bra007401.1-P	Field mustard	cytosol	11.3	16.26
Bra036542.1-P	Field mustard	cytosol	24.86	14.29
Bra009835.1-P	Field mustard	cytosol	23.45	13.34
Bra005669.1-P	Field mustard	cytosol	25.14	13.32
Bra029656.1-P	Field mustard	cytosol	14.69	13.16
Bra034254.1-P	Field mustard	cytosol	22.6	12.86
Bra012785.1-P	Field mustard	cytosol	22.6	12.74
Bra036607.1-P	Field mustard	cytosol	21.47	11.89
Bra009931.1-P	Field mustard	cytosol	21.47	11.88
Bra032213.1-P	Field mustard	plastid	16.67	11.48
Bra037120.1-P	Field mustard	cytosol	16.95	11.41
Bra029994.1-P	Field mustard	cytosol	16.38	11.35

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra015699	EnsemblPlants:Bra015699.1	EnsemblPlants:Bra015699.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4DGS4	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002541A8D	SEG:seg	:	:	:	:

Description

AT1G77000 (E=1e-180) ATSKP2;2, SKP2B | SKP2B; ubiquitin-protein ligase

Coordinates

chrA07:+:21308454..21310238

Molecular Weight (calculated)

39104.5 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.012

Length

354 amino acids

Sequence
(BLAST)

001: MSEGGSLNRC FEKMEGNMIT EWKDIPVELL MRILNLVDDR TVIIASGVCS GWRDAISFGL THLSLSWCKK DMNSLVLSLA PKLVKLQTLV LRQDKPQLED
101: NAVEAIANHC HELQDLDLSK SLKLTDRSLY SLARGCNNLT KLNLSGCTSF SDTALAYLTR FCRKLKVLNL CGCVEAVSDN ALQAIGENCS QMQSLNLGWC
201: EKISDDGVMS LAYGCPDLRS LDLCGCVLIT DESVVALANR CVHLRSLGLY YCRNITDRAM YSLAQSGVKN KHEMWRSVKK GKFDEEGLRN LNISQCTYLT
301: PSAVQAVCDT FPALHTCSGR HSLVMSGCLN LTSVHCACIL QAHRTHTALP HPAH

Best Arabidopsis Sequence Match ( AT1G77000.2 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.